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BaseInfo

ncRNA ID novel_zma_miR11232
Species Zea mays
Class miRNA
Genome position Chr1:142232494-142232554 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - AUAGGUACCUGAGCGCGCAACGCC - 24
Stem-loop(if miRNA) --A      C     C     -   -     
   UAGGUA CUGAG GCGCA ACG CCUUGA
   |||||| ||||| ||||| ||| |||||G
   AUCUAU GACUC CGUGU UGC GGAAUC
UAG      C     C     A   A     
Stem-loop sequence AUAGGUACCUGAGCGCGCAACGCCUUGAGCUAAGGACGUAUGUGCCCUCAGCUAUCUAGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU969222.1
ncRNA:24   CCGCAACGCGCGAGUCCAUGGAUA   1
  |||||||*||||||||||||||||
targets:618   GGCGUUGGGCGCUCAGGUACCUAU   641

1.0 Zea mays clone 327027 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008661405.2
ncRNA:24   CCGCAACGCGCGAGUCCAUGGAUA   1
  |||||||*||||||||||||||||
targets:745   GGCGUUGGGCGCUCAGGUACCUAU   768

1.0 PREDICTED: Zea mays uncharacterized LOC103638507 (LOC103638507), mRNA NA coding protein psRNATarget
BT019125.1
ncRNA:24   CCGCAACGCGCGAGUCCAUGGAUA   1
  ||||*||*|||=||||||||||||
targets:391   GGCGCUGGGCGUUCAGGUACCUAU   414

2.5 Zea mays clone Contig739.F mRNA sequence NA coding protein psRNATarget