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BaseInfo

ncRNA ID novel_zma_miR11229
Species Zea mays
Class miRNA
Genome position Chr10:98383874-98383924 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - GCAGGACUACUGUUCGCCCGAGGC - 24
Stem-loop(if miRNA) --   G      UG          G
  GCA GACUAC  UUCGCCCGAG C
  ||| ||||||  |||||||||| U
  CGU UUGAUG  AAGCGGGCUC G
GU   G      CA          G
Stem-loop sequence GCAGGACUACUGUUCGCCCGAGGCUGGCUCGGGCGAAACGUAGUUGUGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ086476.1
ncRNA:24   CGGAGCCCGCUUGUCAUCAGGACG   1
  |||**||||*||||*|||||||||
targets:2   GCCCAGGGCAAACACUAGUCCUGC   25

2.5 TSA: Zea mays contig22122, mRNA sequence NA coding protein psRNATarget