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BaseInfo

ncRNA ID novel_zma_miR11227
Species Zea mays
Class miRNA
Genome position Chr8:53251151-53251200 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 27 - AUUUUUGGCGGCCACUGACACAGC - 50
Stem-loop(if miRNA) -----UUG  C              UA
        AG UGGCCGUCGAAAAU  G
        || ||||||||||||||
        UC ACCGGCGGUUUUUA  U
CGACACAG  -              UA
Stem-loop sequence UUGAGCUGGCCGUCGAAAAUUAGUAUAUUUUUGGCGGCCACUGACACAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU946477.1
ncRNA:24   CGACACAGUCACCGGCGGUUUUUA   1
  ||*|||||||||||||||=|||||
targets:541   GCCGUGUCAGUGGCCGCCGAAAAU   564

1.5 Zea mays clone 313395 mRNA sequence NA coding protein psRNATarget
XM_020541607.1
ncRNA:24   CGACACAGUCACCGGCGGUUUUUA   1
  ||*|||||||*|||||||=|||||
targets:632   GCCGUGUCAGGGGCCGCCGAAAAU   655

2.5 PREDICTED: Zea mays spidroin-1-like (LOC109941115), mRNA NA coding protein psRNATarget