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BaseInfo

ncRNA ID novel_zma_miR11225
Species Zea mays
Class miRNA
Genome position Chr1:140188194-140188317 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - AUUUUCGUCGGCCACUGAGGUCGA - 24
Stem-loop(if miRNA) --          G  --   G                CA                 -  AUAU
  AUUUUCGUCG CC  ACU AGGUCGACGAAAAUAG  GUUAUUUUCGUGGGCCG CU    U
  |||||||||| ||  ||| ||||||||||||||||  ||||||||||||||||| ||    U
  UAAAAGCAGC GG  UGA UCCAGCUGCUUUUAUC  CAAUAAAAGCACCCGGC GG    U
CA          A  AC   A                UC                 C  CUGC
Stem-loop sequence AUUUUCGUCGGCCACUGAGGUCGACGAAAAUAGCAGUUAUUUUCGUGGGCCGCUAUAUUUUCGUCGGCCGGCCCACGAAAAUAACCUCUAUUUUCGUCGACCUAAGUCAGGACGACGAAAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541648.1
ncRNA:24   AGCUGGAGUCACCGGCUGCUUUUA   1
  ||*=||*|*|*|||||||||||||
targets:43   UCAGCCACUGAGGCCGACGAAAAU   66

3.0 PREDICTED: Zea mays extensin-like (LOC103634127), mRNA NA coding protein psRNATarget