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BaseInfo

ncRNA ID novel_zma_miR11206
Species Zea mays
Class miRNA
Genome position Chr8:133348867-133349072 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 20
Mature sequence(if miRNA) 187 - AUACGGUCCGGAUUGCUAGC - 206
Stem-loop(if miRNA) --C  UG   A  U G      ----U  ---A  U    -    GAU      U  G   UC   -   AG ACUGUGAUGUCGAGCGUGUAUAUCGAAGUGCAUUGUG
   AG  GUC CG G UGUGUU     GG    UG GACA AGUA   UGGAAG GU GGG  UGU CGA  C                                     G
   ||  ||| || | ||||||     ||    || |||| ||||   |||||| || |||  ||| |||  |                                     U
   UC  UAG GC U GCAUAA     CC    AC CUGU UCGU   ACCUUC CA UUU  ACA CGU  A                                     G
CGA  GU   -  C G      CUUUU  AAGG  U    G    ---      U  G   UA   C   -- CGUGAGCUCUGUGAUGGCUAAUUGAAUUGUGUUAAUG
Stem-loop sequence CAGUGGUCACGUGGUGUGUUUGGAUGUGACAAGUAGAUUGGAAGUGUGGGGUCUGUCGAAGCACUGUGAUGUCGAGCGUGUAUAUCGAAGUGCAUUGUGGUGGUAAUUGUGUUAAGUUAAUCGGUAGUGUCUCGAGUGCAUGCCACAAUUUUGACUCUUCCAUGCUGUGUCUCAGGAACCUUUUCAAUACGGUCCGGAUUGCUAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ063661.1
ncRNA:20   CGAUCG-UUAGGCCUGGCAUA   1
  *|||*|-||||||||||||||
targets:225   UCUAUCGAAUCCGGACCGUAU   245

3.0 TSA: Zea mays contig64783, mRNA sequence NA coding protein psRNATarget
AY111508.1
ncRNA:20   CGAUCG-UUAGGCCUGGCAUA   1
  *|||*|-||||||||||||||
targets:289   UCUAUCGAAUCCGGACCGUAU   309

3.0 Zea mays CL15997_1 mRNA sequence NA coding protein psRNATarget