ncRNA ID | novel_zma_miR11206 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr8:133348867-133349072 [+] |
Reference genome | RefGen_v4 |
Source | SRR1997865 |
Length | 20 |
Mature sequence(if miRNA) | 187 - AUACGGUCCGGAUUGCUAGC - 206 |
Stem-loop(if miRNA) |
--C  UG   A  U G      ----U  ---A  U    -    GAU      U  G   UC   -   AG ACUGUGAUGUCGAGCGUGUAUAUCGAAGUGCAUUGUG    AG  GUC CG G UGUGUU     GG    UG GACA AGUA   UGGAAG GU GGG  UGU CGA  C                                     G    ||  ||| || | ||||||     ||    || |||| ||||   |||||| || |||  ||| |||  |                                     U    UC  UAG GC U GCAUAA     CC    AC CUGU UCGU   ACCUUC CA UUU  ACA CGU  A                                     G CGA  GU   -  C G      CUUUU  AAGG  U    G    ---      U  G   UA   C   -- CGUGAGCUCUGUGAUGGCUAAUUGAAUUGUGUUAAUG |
Stem-loop sequence | CAGUGGUCACGUGGUGUGUUUGGAUGUGACAAGUAGAUUGGAAGUGUGGGGUCUGUCGAAGCACUGUGAUGUCGAGCGUGUAUAUCGAAGUGCAUUGUGGUGGUAAUUGUGUUAAGUUAAUCGGUAGUGUCUCGAGUGCAUGCCACAAUUUUGACUCUUCCAUGCUGUGUCUCAGGAACCUUUUCAAUACGGUCCGGAUUGCUAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ063661.1 |
|
3.0 | TSA: Zea mays contig64783, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
AY111508.1 |
|
3.0 | Zea mays CL15997_1 mRNA sequence | NA | coding protein | psRNATarget |