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BaseInfo

ncRNA ID	novel_zma_miR11201
Species	Zea mays
Class	miRNA
Genome position	Chr8:124731645-124731818 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	25
Mature sequence(if miRNA)	150 - UAAGAACCUCCAAGUUAAGGGUGCU - 174
Stem-loop(if miRNA)	--       C  C        G                     A  -                AAAGUUUU   G GUGCGUAUGAGUGCU   UAAGAAC UC AAGUUAAG GUGCUUGGCUUGGAGCAAUUU GG AUGGGUGACCGACCGG        CUC G               A   ||||||| || |||||||| ||||||||||||||||||||| || ||||||||||||||||        ||| |   AUUUUUG AG UUCAGUUC UACGAACCGAACCUCGUUAAA CC UACCCACUGGCUGGCC        GAG G               U GC       -  A        G                     -  A                ----CUUG   - UUCAGUUCUCGAGAA
Stem-loop sequence	UAAGAACCUCCAAGUUAAGGGUGCUUGGCUUGGAGCAAUUUAGGAUGGGUGACCGACCGGAAAGUUUUCUCGGGUGCGUAUGAGUGCUAUAAGAGCUCUUGACUUGGAGGUUCCCGGUCGGUCACCCAUACCAAAUUGCUCCAAGCCAAGCAUGCUUGACUUAGAGUUUUUACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545669.1	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   |||||*||||||||||||||||||* targets:82   AGCACGCUUAACUUGGAGGUUCUUU   106 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103642018 (LOC103642018), mRNA	NA	coding protein	psRNATarget
BT062910.1	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   |||||*||||||||||||||||||* targets:82   AGCACGCUUAACUUGGAGGUUCUUU   106 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0006H09 mRNA, complete cds	NA	coding protein	psRNATarget
BT069211.2	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   |||||*|||||||||||*||||||* targets:793   AGCACGCUUAACUUGGAAGUUCUUU   817 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0334L03 mRNA, complete cds	NA	coding protein	psRNATarget
BT065994.1	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   |*|||*||||||||||||||||||* targets:2777   AACACGCUUAACUUGGAGGUUCUUU   2801 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0139E09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671178.2	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   ***|*=||*|||||||||||||||= targets:1964   UUGAAUCUGAACUUGGAGGUUCUUG   1988 Target Full Sequence	2.0	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC103646444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008671176.2	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   ***|*=||*|||||||||||||||= targets:1990   UUGAAUCUGAACUUGGAGGUUCUUG   2014 Target Full Sequence	2.0	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC103646444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671177.2	ncRNA:25   UCGUGGGAAUUGAACCUCCAAGAAU   1   ***|*=||*|||||||||||||||= targets:1997   UUGAAUCUGAACUUGGAGGUUCUUG   2021 Target Full Sequence	2.0	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC103646444), transcript variant X2, mRNA	NA	coding protein	psRNATarget