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BaseInfo

ncRNA ID	novel_zma_miR11196
Species	Zea mays
Class	miRNA
Genome position	Chr8:134429405-134429586 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	159 - UAUACUCCCUCCGUCUCAGGAUAU - 182
Stem-loop(if miRNA)	--                  GG                     UA   UU UC   CAAUAUAAG    ---GCUC         A   -    A   UAUACUCCCUCCGUCUCA  AUAUAAGGCGUAACCACUUUU  UUC  G  CCA         GCGU       UCUCUAUGC UAC GUAU U   ||||||||||||||||||  |||||||||||||||||||||  |||  |  |||         ||||       ||||||||| ||| ||||   AUAUGAGGGAGGCAGGGU  UAUAUUCCGCAUUGGUGGAGA  AAG  U  GGU         CGUA       AGAGAUAUG GUG CGUA C CA                  GA                     CC   UU CU   ---UCUUUA    AAUUAAC         -   A    G
Stem-loop sequence	UAUACUCCCUCCGUCUCAGGAUAUAAGGCGUAACCACUUUUUAUUCUUGUCCCACAAUAUAAGGCGUGCUCUCUCUAUGCAUACGUAUAUCGAUGCAGUGGUAUAGAGACAAUUAAAUGCAUUUCUUGGUCUUUGAACCAGAGGUGGUUACGCCUUAUAUAGUGGGACGGAGGGAGUAUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546407.1	ncRNA:24   UAUAGGACUCUGCCUCCCUCAUAU   1   ||||||||||||||||||||||*| targets:932   AUAUCCUGAGACGGAGGGAGUAGA   955 Target Full Sequence	1.5	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109943429), mRNA	NA	coding protein	psRNATarget
EU957638.1	ncRNA:24   UAUAGGACUCUGCCUCCCUCAU-AU   1   ||||*|||||||||||||||||-|| targets:2008   AUAUACUGAGACGGAGGGAGUAAUA   2032 Target Full Sequence	3.0	Zea mays clone 1600726 cytochrome P450 CYP78A54 mRNA, complete cds	NA	coding protein	psRNATarget
BT084952.2	ncRNA:24   UAUAGGACUCUGCCUCCCUCAUAU   1   *|||*=||=||||||||||||||| targets:35   CUAUGUUGGGACGGAGGGAGUAUA   58 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0213O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147251.1	ncRNA:24   UAUAGGACUCUGCCUCCCUCAUAU   1   ||||*|||=|||||||||||||*| targets:2076   AUAUACUGGGACGGAGGGAGUACA   2099 Target Full Sequence	2.5	Zea mays Regulator of Vps4 activity in the MVB pathway protein (LOC100272798), mRNA	NA	coding protein	psRNATarget
BT039461.1	ncRNA:24   UAUAGGACUCUGCCUCCCUCAUAU   1   ||||*|||=|||||||||||||*| targets:2076   AUAUACUGGGACGGAGGGAGUACA   2099 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0014I07 mRNA, complete cds	NA	coding protein	psRNATarget