Search result

BaseInfo

ncRNA ID	novel_zma_miR11187
Species	Zea mays
Class	miRNA
Genome position	Chr8:155442745-155442831 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	1 - AUCUGGACAGAUUAUAAUCUC - 21
Stem-loop(if miRNA)	--         A                  -CA   ACCUUUGA   GAUUAUAAU UGUCCAGAUUAUAUAAUC   ACA        A   ||||||||| ||||||||||||||||||   |||   CUAAUAUUA ACAGGUCUAAUAUAUUAG   UGU        C CU         G                  ACC   CUAAUAUU
Stem-loop sequence	GAUUAUAAUAUGUCCAGAUUAUAUAAUCCAACAACCUUUGAACUUAUAAUCUGUCCAGAUUAUAUAAUCUGGACAGAUUAUAAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235553.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   ||||||||||||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	0.0	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
JB163884.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   ||||||||||||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	0.0	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
HI403307.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   ||||||||||||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	0.0	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
JB163768.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   ||||||||||||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	0.0	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
HI403423.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   ||||||||||||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	0.0	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   ||||||||||||||||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	0.0	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
EU944194.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |=||||||||||||||||||| targets:277   GGGAUUAUAAUCUGUCCAGAU   297 Target Full Sequence	0.0	Zea mays clone 1711585 mRNA sequence	NA	coding protein	psRNATarget
EU948493.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |=||||||||||||||||||| targets:251   GGGAUUAUAAUCUGUCCAGAU   271 Target Full Sequence	0.0	Zea mays clone 378933 mRNA sequence	NA	coding protein	psRNATarget
XM_020544030.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |=|||||||||||||=||||| targets:1607   GGGAUUAUAAUCUGUUCAGAU   1627 Target Full Sequence	1.5	PREDICTED: Zea mays probable protein phosphatase 2C 58 (LOC103638831), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661638.2	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |=|||||||||||||=||||| targets:1586   GGGAUUAUAAUCUGUUCAGAU   1606 Target Full Sequence	1.5	PREDICTED: Zea mays probable protein phosphatase 2C 58 (LOC103638831), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY106158.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |=|||||||||||||=||||| targets:743   GGGAUUAUAAUCUGUUCAGAU   763 Target Full Sequence	1.5	Zea mays PCO109280 mRNA sequence	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |||||||||||*||||||||| targets:4977   GAGAUUAUAAUAUGUCCAGAU   4997 Target Full Sequence	1.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JB167517.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |||||||||||||*||||||| targets:9   GAGAUUAUAAUCUAUCCAGAU   29 Target Full Sequence	1.5	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
HI407056.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |||||||||||||*||||||| targets:9   GAGAUUAUAAUCUAUCCAGAU   29 Target Full Sequence	1.5	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   |||||||||||||*||||||| targets:9   GAGAUUAUAAUCUAUCCAGAU   29 Target Full Sequence	1.5	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
EU976590.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   *||||||||||||*||||||| targets:1628   CAGAUUAUAAUCUCUCCAGAU   1648 Target Full Sequence	1.5	Zea mays clone 984325 mRNA sequence	NA	coding protein	psRNATarget
XM_008661345.2	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   *=||||||||||||*|||||| targets:3260   AGGAUUAUAAUCUGCCCAGAU   3280 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA	NA	coding protein	psRNATarget
EU945179.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   *=||||||||||||*|||||| targets:849   AGGAUUAUAAUCUGCCCAGAU   869 Target Full Sequence	1.5	Zea mays clone 243633 mRNA sequence	NA	coding protein	psRNATarget
AY104747.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   *=||||||||||||*|||||| targets:902   AGGAUUAUAAUCUGCCCAGAU   922 Target Full Sequence	1.5	Zea mays PCO066213 mRNA sequence	NA	coding protein	psRNATarget
EZ065605.1	ncRNA:21   CUCUAAUAUUAGACAGGUCUA   1   *=||||||||||||*|||||| targets:269   AGGAUUAUAAUCUGCCCAGAU   289 Target Full Sequence	1.5	TSA: Zea mays contig01238, mRNA sequence	NA	coding protein	psRNATarget
HI406797.1	ncRNA:20   UCUAAUAUUAGACAGGUCUA   1   =||||||||||||*|||||| targets:1   GGAUUAUAAUCUGCCCAGAU   20 Target Full Sequence	1.5	Sequence 4922 from Patent EP2074227	NA	coding protein	psRNATarget
HI406776.1	ncRNA:20   UCUAAUAUUAGACAGGUCUA   1   =||||||||||||*|||||| targets:1   GGAUUAUAAUCUGCCCAGAU   20 Target Full Sequence	1.5	Sequence 4901 from Patent EP2074227	NA	coding protein	psRNATarget
JB167237.1	ncRNA:20   UCUAAUAUUAGACAGGUCUA   1   =||||||||||||*|||||| targets:1   GGAUUAUAAUCUGCCCAGAU   20 Target Full Sequence	1.5	Sequence 4901 from Patent EP2559767	NA	coding protein	psRNATarget
JB167258.1	ncRNA:20   UCUAAUAUUAGACAGGUCUA   1   =||||||||||||*|||||| targets:1   GGAUUAUAAUCUGCCCAGAU   20 Target Full Sequence	1.5	Sequence 4922 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238906.1	ncRNA:20   UCUAAUAUUAGACAGGUCUA   1   =||||||||||||*|||||| targets:1   GGAUUAUAAUCUGCCCAGAU   20 Target Full Sequence	1.5	Sequence 4901 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238927.1	ncRNA:20   UCUAAUAUUAGACAGGUCUA   1   =||||||||||||*|||||| targets:1   GGAUUAUAAUCUGCCCAGAU   20 Target Full Sequence	1.5	Sequence 4922 from Patent EP2985353	NA	coding protein	psRNATarget