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BaseInfo

ncRNA ID	novel_zma_miR11162
Species	Zea mays
Class	miRNA
Genome position	Chr8:118408073-118408138 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	43 - GCACCAGGCCGCGGACUGUCCGGC - 66
Stem-loop(if miRNA)	CG  A         -C    -C  A   -A  AC   CG ACAGUCCGC  CCUG  GC GAG  GU  C   || |||||||||  ||||  || |||  ||   GC UGUCAGGCG  GGAC  CG CUC  CG  A CG  C         CC    CA  -   CG  CC
Stem-loop sequence	CGCGAACAGUCCGCCCCUGCGCAGAGAGUACCACCGCGCCUCGCACCAGGCCGCGGACUGUCCGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   CGGCCUGUCAGGCGCCGGACCACG   1   |||||||=|||||||||||||||| targets:929   GCCGGACGGUCCGCGGCCUGGUGC   952 Target Full Sequence	1.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:24   CGGCCUGUCAGGCGCCGGACCACG   1   |||||||=||||||||||||||*| targets:856   GCCGGACGGUCCGCGGCCUGGUAC   879 Target Full Sequence	2.5	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGGCCUGUCAGGCGCCGGACCACG   1   |||||||=|||||||*|||||||| targets:722   GCCGGACGGUCCGCGACCUGGUGC   745 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CG-GCCUGUCAGGCGCCGGACCACG   1   ||-|||||=|||||||||||||*|| targets:191   GCGCGGACGGUCCGCGGCCUGGGGC   215 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CG-GCCUGUCAGGCGCCGGACCACG   1   ||-|||||=|||||||||||||*|| targets:663   GCGCGGACGGUCCGCGGCCUGGGGC   687 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CG-GCCUGUCAGGCGCCGGACCACG   1   ||-|||||=|||||||||||||*|| targets:1348   GCACGGACGGUCCGCGGCCUGGGGC   1372 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CG-GCCUGUCAGGCGCCGGACCACG   1   ||-|||||=|||||||||||||*|| targets:1430   GCACGGACGGUCCGCGGCCUGGGGC   1454 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545392.1	ncRNA:24   CGGCCUGUCAGGCGCCGGACCACG   1   *||--||=|||||||||||||*|| targets:346   CCC--ACGGUCCGCGGCCUGGAGC   367 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109942838), mRNA	NA	coding protein	psRNATarget