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BaseInfo

ncRNA ID novel_zma_miR11157
Species Zea mays
Class miRNA
Genome position Chr8:10228489-10228558 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 1 - GGUUUGAGGGGGCUAGAAUCC - 21
Stem-loop(if miRNA) --            C  G     A          A
  GGUUUGAGGGGG UA AAUCC UCAUUAUUCA A
  |||||||||||| || ||||| ||||||||||
  CCAAACUCCCUC AU UUAGG AGUGAUAAGU A
CC            A  G     G          U
Stem-loop sequence GGUUUGAGGGGGCUAGAAUCCAUCAUUAUUCAAAAUUGAAUAGUGAGGGAUUGUAACUCCCUCAAACCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546477.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||=||||||||||||*||
targets:2   GGAUUUUAGCCCCCUCAAUCC   22

2.5 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
NM_001147213.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:1499   UGAUACUAGUCCCCUCAAACC   1519

2.5 Zea mays putative disease resistance protein (LOC100272760), mRNA NA coding protein psRNATarget
BT039368.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:1499   UGAUACUAGUCCCCUCAAACC   1519

2.5 Zea mays full-length cDNA clone ZM_BFc0008B04 mRNA, complete cds NA coding protein psRNATarget
XM_020547511.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:2334   UGAUACUAGUCCCCUCAAACC   2354

2.5 PREDICTED: Zea mays putative disease resistance protein (LOC100272760), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547510.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:2455   UGAUACUAGUCCCCUCAAACC   2475

2.5 PREDICTED: Zea mays putative disease resistance protein (LOC100272760), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547508.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:2526   UGAUACUAGUCCCCUCAAACC   2546

2.5 PREDICTED: Zea mays putative disease resistance protein (LOC100272760), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547509.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:2589   UGAUACUAGUCCCCUCAAACC   2609

2.5 PREDICTED: Zea mays putative disease resistance protein (LOC100272760), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547507.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  *|||*||||=|||||||||||
targets:2689   UGAUACUAGUCCCCUCAAACC   2709

2.5 PREDICTED: Zea mays putative disease resistance protein (LOC100272760), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238157.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||*||||||||||||*||
targets:80   GGAUUAUAGCCCCCUCAAUCC   100

2.5 Sequence 4152 from Patent EP2985353 NA coding protein psRNATarget
HI406027.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||*||||||||||||*||
targets:80   GGAUUAUAGCCCCCUCAAUCC   100

2.5 Sequence 4152 from Patent EP2074227 NA coding protein psRNATarget
JB166488.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||*||||||||||||*||
targets:80   GGAUUAUAGCCCCCUCAAUCC   100

2.5 Sequence 4152 from Patent EP2559767 NA coding protein psRNATarget
BT062966.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||*||||||||||||*||
targets:2616   GGAUUAUAGCCCCCUCAAUCC   2636

2.5 Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds NA coding protein psRNATarget
NM_001174804.1
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||*||||||||||||*||
targets:2616   GGAUUAUAGCCCCCUCAAUCC   2636

2.5 Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA NA coding protein psRNATarget
XM_008663899.2
ncRNA:21   CCUAAGAUCGGGGGAGUUUGG   1
  |||||*||||||||||||*||
targets:2704   GGAUUAUAGCCCCCUCAAUCC   2724

2.5 PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA NA coding protein psRNATarget
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