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BaseInfo

ncRNA ID	novel_zma_miR11139
Species	Zea mays
Class	miRNA
Genome position	Chr7:10283434-10283557 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	104 - UUGUUUGGGAGUAAGGAUACC - 124
Stem-loop(if miRNA)	--                   -  UGAA       G   A C        CU           A   UUGUUUGGGAGUAAGGAUA CC    GGGGAUU GAG G CUAAAAUU  CUUGUUAUUUA A   ||||||||||||||||||| ||    ||||||| ||| | ||||||||  ||||||||||| A   AACAAACCCUCGUUUCUAU GG    CUCCUAA CUC C GAUUUUAG  GAACGAUAAAU A CG                   A  ----       A   C C        UG           U
Stem-loop sequence	UUGUUUGGGAGUAAGGAUACCUGAAGGGGAUUGGAGAGCCUAAAAUUCUCUUGUUAUUUAAAAAUUAAAUAGCAAGGUGAUUUUAGCCCCUCAAAUCCUCGGAUAUCUUUGCUCCCAAACAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY111470.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   ||||||||||||=|||||||| targets:742   GGUAUCCUUACUUCCAAACAA   762 Target Full Sequence	1.5	Zea mays CL18010_1 mRNA sequence	NA	coding protein	psRNATarget
BT016976.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   ||||||||||||=|||||||| targets:172   GGUAUCCUUACUUCCAAACAA   192 Target Full Sequence	1.5	Zea mays clone EK07D2303A11.c mRNA sequence	NA	coding protein	psRNATarget
XM_008645953.2	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   *||||||||=||||||||||| targets:1736   UGUAUCCUUGCUCCCAAACAA   1756 Target Full Sequence	1.5	PREDICTED: Zea mays Actin-related protein 2/3 complex subunit 1A (LOC100384689), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645952.2	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   *||||||||=||||||||||| targets:1703   UGUAUCCUUGCUCCCAAACAA   1723 Target Full Sequence	1.5	PREDICTED: Zea mays Actin-related protein 2/3 complex subunit 1A (LOC100384689), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963543.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   *||||||||=||||||||||| targets:1436   UGUAUCCUUGCUCCCAAACAA   1456 Target Full Sequence	1.5	Zea mays clone 263925 mRNA sequence	NA	coding protein	psRNATarget
XM_008652724.2	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   |*||||*||=||||||||||| targets:2361   GCUAUCAUUGCUCCCAAACAA   2381 Target Full Sequence	2.5	PREDICTED: Zea mays 40S ribosomal protein S3-1 (LOC100194112), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001139165.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   |*||||*||=||||||||||| targets:1183   GCUAUCAUUGCUCCCAAACAA   1203 Target Full Sequence	2.5	Zea mays 40S ribosomal protein S3-1 (LOC100194112), mRNA	NA	coding protein	psRNATarget
BT036560.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   |*||||*||=||||||||||| targets:1183   GCUAUCAUUGCUCCCAAACAA   1203 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0123I24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **|*|||||=||||||||||| targets:2793   AAUCUCCUUGCUCCCAAACAA   2813 Target Full Sequence	2.5	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU968858.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:1164   AUUACCUUUACUCCCAAACAA   1184 Target Full Sequence	2.0	Zea mays clone 324588 mRNA sequence	NA	coding protein	psRNATarget
AY104107.2	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:1305   AUUACCUUUACUCCCAAACAA   1325 Target Full Sequence	2.0	Zea mays PCO062189 mRNA sequence	NA	coding protein	psRNATarget
NM_001137008.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:1057   AUUACCUUUACUCCCAAACAA   1077 Target Full Sequence	2.0	Zea mays calcineurin B-like protein (CBL1), mRNA	NA	coding protein	psRNATarget
BT033702.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:1057   AUUACCUUUACUCCCAAACAA   1077 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds	NA	coding protein	psRNATarget
EU943966.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **|*|||||=||||||||||| targets:344   AAUCUCCUUGCUCCCAAACAA   364 Target Full Sequence	2.5	Zea mays clone 1702383 mRNA sequence	NA	coding protein	psRNATarget
HI405942.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:105   AUUACCUUUACUCCCAAACAA   125 Target Full Sequence	2.0	Sequence 4067 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238072.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:105   AUUACCUUUACUCCCAAACAA   125 Target Full Sequence	2.0	Sequence 4067 from Patent EP2985353	NA	coding protein	psRNATarget
HI405950.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:105   AUUACCUUUACUCCCAAACAA   125 Target Full Sequence	2.0	Sequence 4075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238080.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:105   AUUACCUUUACUCCCAAACAA   125 Target Full Sequence	2.0	Sequence 4075 from Patent EP2985353	NA	coding protein	psRNATarget
JB166403.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:105   AUUACCUUUACUCCCAAACAA   125 Target Full Sequence	2.0	Sequence 4067 from Patent EP2559767	NA	coding protein	psRNATarget
JB166411.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   **||*|=|||||||||||||| targets:105   AUUACCUUUACUCCCAAACAA   125 Target Full Sequence	2.0	Sequence 4075 from Patent EP2559767	NA	coding protein	psRNATarget
AY109089.1	ncRNA:21   CCAUAGGAAUGAGGGUUUGUU   1   ***||||||*||||||||||| targets:776   UCAAUCCUUUCUCCCAAACAA   796 Target Full Sequence	2.5	Zea mays PCO082815 mRNA sequence	NA	coding protein	psRNATarget