Search result

BaseInfo

ncRNA ID	novel_zma_miR11132
Species	Zea mays
Class	miRNA
Genome position	Chr7:22632392-22632529 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	115 - AUGUACUGAGAUAUCUGUUGUAGG - 138
Stem-loop(if miRNA)	--A      G         -U   --     -G   AAGCCUCCGAGGGCGCUGCCGACGCCUACAUAGCG    UGUACU AGAUAUCUG  UGU  AGGUC  GGA                                   U    |||||| |||||||||  |||  |||||  |||    AUAUGA UUUAUGGGU  ACA  UCCGG  UCG                                   A GAA      G         UU   AG     AG   CCGAUGUUUGUUGUUUGUGUGCAUGAGCCCUAUUG
Stem-loop sequence	AUGUACUGAGAUAUCUGUUGUAGGUCGGGAAAGCCUCCGAGGGCGCUGCCGACGCCUACAUAGCGUAGUUAUCCCGAGUACGUGUGUUUGUUGUUUGUAGCCGCUGAGGCCUGAACAUUUGGGUAUUUGAGUAUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646044.2	ncRNA:24   GGAUGUUGUCUAUAGAGUCAUGUA   1   ***=*|=|||||||=||||||||| targets:707   GAAGAAGCAGAUAUUUCAGUACAU   730 Target Full Sequence	2.5	PREDICTED: Zea mays Chloride channel (pco116691), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537575.1	ncRNA:24   GGAUGUUGUCUAUAGAGUCAUGUA   1   ***=*|=|||||||=||||||||| targets:530   GAAGAAGCAGAUAUUUCAGUACAU   553 Target Full Sequence	2.5	PREDICTED: Zea mays Chloride channel (pco116691), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY236970.2	ncRNA:24   GGAUGUUGUCUAUAGAGUCAUGUA   1   ***=*|=|||||||=||||||||| targets:249   GAAGAAGCAGAUAUUUCAGUACAU   272 Target Full Sequence	2.5	Zea mays chloride channel mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111746.1	ncRNA:24   GGAUGUUGUCUAUAGAGUCAUGUA   1   ***=*|=|||||||=||||||||| targets:249   GAAGAAGCAGAUAUUUCAGUACAU   272 Target Full Sequence	2.5	Zea mays Chloride channel (pco116691), mRNA	NA	coding protein	psRNATarget