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BaseInfo

ncRNA ID novel_zma_miR11125
Species Zea mays
Class miRNA
Genome position Chr5:40685471-40685582 [-]
Reference genome RefGen_v4
Source SRR1583942
Length 21
Mature sequence(if miRNA) 1 - CGUCUUAGGUAGCAAACCAAA - 21
Stem-loop(if miRNA) --      C                 -A  UGUCUAACCCUAGUCGCUCGAAUUGA
  UGGUUU CUACCUAAGGCGUCAUA  UC                          A
  |||||| |||||||||||||||||  ||                          G
  ACCAAA GAUGGAUUCUGCGGUGU  CA                          A
AA      C                 UG  CAGAUUGAAAAGAUAGAUUGGAAUCA
Stem-loop sequence UGGUUUCCUACCUAAGGCGUCAUAAUCUGUCUAACCCUAGUCGCUCGAAUUGAAGAACUAAGGUUAGAUAGAAAAGUUAGACACGUUGUGGCGUCUUAGGUAGCAAACCAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ049437.1
ncRNA:21   AAACCAAACGAUGGAUUCUGC   1
  |||||||||||||||||||||
targets:51   UUUGGUUUGCUACCUAAGACG   71

0.0 TSA: Zea mays contig50555, mRNA sequence NA coding protein psRNATarget