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BaseInfo

ncRNA ID novel_zma_miR11123
Species Zea mays
Class miRNA
Genome position Chr7:59965538-59965639 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 23
Mature sequence(if miRNA) 80 - GACAGAUCCUGUUAAGUUAUCCG - 102
Stem-loop(if miRNA) --      U   G         CC   G         AGUC    GAG   U
  GACAGA CCU UUAAGUUAU  GGU CACAUGCAU    GUCU   GUC U
  |||||| ||| |||||||||  ||| |||||||||    ||||   ||| U
  CUGUCU GGA GGUUCAAUA  CCG GUGUACGUA    UAGG   CAG G
CA      U   G         AC   G         --GA    -AA   A
Stem-loop sequence GACAGAUCCUGUUAAGUUAUCCGGUGCACAUGCAUAGUCGUCUGAGGUCUUUGAGACAAGGAUAGAUGCAUGUGGGCCCAAUAACUUGGGAGGUUCUGUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ087213.1
ncRNA:23   GCCUAUUGAAUUGUCCUAGACAG   1
  |*|||||||||||||||||*|||
targets:59   CAGAUAACUUAACAGGAUCCGUC   81

1.5 TSA: Zea mays contig22859, mRNA sequence NA coding protein psRNATarget
EZ058335.1
ncRNA:23   GCCUAUUGAAUUGUCCUAGACAG   1
  |*|||||||||||||||||*|||
targets:498   CAGAUAACUUAACAGGAUCCGUC   520

1.5 TSA: Zea mays contig59457, mRNA sequence NA coding protein psRNATarget
BT067946.2
ncRNA:23   GCCUAUUGAAUUGUCCUAGACAG   1
  |*|||||||||||||||||*|||
targets:471   CAGAUAACUUAACAGGAUCAGUC   493

1.5 Zea mays full-length cDNA clone ZM_BFb0003M08 mRNA, complete cds NA coding protein psRNATarget