Search result

BaseInfo

ncRNA ID	novel_zma_miR11120
Species	Zea mays
Class	miRNA
Genome position	Chr1:88531626-88531795 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	150 - UUUUGUAUAUGGAUGAGGUAA - 170
Stem-loop(if miRNA)	--   A                    U         C           AUA          -      ---   UG -U   UUUGA   ACC CAUCUAUAUACAAAAUUUCA GGUCAAAUU AUCUUACUCUA   GUUACAAAAA GACAAA   UUU  G  ACA     A   ||| |||||||||||||||||||| ||||||||| |||||||||||   |||||||||| ||||||   |||  |  |||     C   UGG GUAGGUAUAUGUUUUAAAGU CCAGUUUAA UAGAAUGAGAU   CAAUGUUUUU CUGUUU   GGA  C  UGU     U AA   A                    U         A           CGG          U      UAA   GU UU   CAUUA
Stem-loop sequence	ACCACAUCUAUAUACAAAAUUUCAUGGUCAAAUUCAUCUUACUCUAAUAGUUACAAAAAGACAAAUUUUGGUACAUUUGAACUAUUACUGUUUCUGAGGAAUUUUGUCUUUUUUGUAACGGCUAGAGUAAGAUAAAUUUGACCUUGAAAUUUUGUAUAUGGAUGAGGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542631.1	ncRNA:21   AAUGGAGUAGGUAUAUGUUUU   1   ||||||||||=|||||||||| targets:5174   UUACCUCAUCUAUAUACAAAA   5194 Target Full Sequence	1.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:21   AAUGGAGUAGGUAUAUGUUUU   1   ||||||||||=|||||||||| targets:4759   UUACCUCAUCUAUAUACAAAA   4779 Target Full Sequence	1.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:21   AAUGGAGUAGGUAUAUGUUUU   1   ||||||||||=|||||||||| targets:4697   UUACCUCAUCUAUAUACAAAA   4717 Target Full Sequence	1.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget