Search result

BaseInfo

ncRNA ID	novel_zma_miR11104
Species	Zea mays
Class	miRNA
Genome position	Chr7:126860112-126860170 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	36 - ACACUCGGCAAAGAACCCACUAGG - 59
Stem-loop(if miRNA)	--A                -C  UA -  A    CACUCGGCAAAGAACC  AC  G GG G    ||||||||||||||||  ||  | || G    GUGAGCCGUUUCUUGG  UG  C CC A AUC                AC  UA G  U
Stem-loop sequence	ACACUCGGCAAAGAACCCACUAGGGAGGAUCCGCAUGUCAGGUUCUUUGCCGAGUGCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241915.1	ncRNA:24   GGA-U-CAC-CCAAGAAACGGCUCACA   1   |||-|-|||-||||||||||||||||* targets:70   CCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	3.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   GGA-U-CAC-CCAAGAAACGGCUCACA   1   |||-|-|||-||||||||||||||||* targets:70   CCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	3.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   GGA-U-CAC-CCAAGAAACGGCUCACA   1   |||-|-|||-||||||||||||||||* targets:70   CCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	3.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   |**||*||*||||||||||||||* targets:10   CAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   |**||*||*||||||||||||||* targets:10   CAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   |**||*||*||||||||||||||* targets:10   CAAAGAGGCUUCUUUGCCGAGUGC   33 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB167529.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   *||=|*||*||||||||||||||* targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64 Target Full Sequence	3.0	Sequence 5193 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239198.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   *||=|*||*||||||||||||||* targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64 Target Full Sequence	3.0	Sequence 5193 from Patent EP2985353	NA	coding protein	psRNATarget
HI407068.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   *||=|*||*||||||||||||||* targets:41   GCUGGCGGAUUCUUUGCCGAGUGC   64 Target Full Sequence	3.0	Sequence 5193 from Patent EP2074227	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   ***|**|||||||||||||||||| targets:584   GGCAAAGGGUUCUUUGCCGAGUGU   607 Target Full Sequence	1.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
HI406203.1	ncRNA:23   GAUCACCCAAGAAACGGCUCACA   1   ||=**||*||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGU   23 Target Full Sequence	2.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:23   GAUCACCCAAGAAACGGCUCACA   1   ||=**||*||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGU   23 Target Full Sequence	2.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
JB166664.1	ncRNA:23   GAUCACCCAAGAAACGGCUCACA   1   ||=**||*||||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGU   23 Target Full Sequence	2.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   GGAUCACCCAAGAAACGGCUCACA   1   |**||*||*||||||||||||||* targets:1093   CAAAGAGGCUUCUUUGCCGAGUGC   1116 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget