Search result

BaseInfo

ncRNA ID novel_zma_miR11085
Species Zea mays
Class miRNA
Genome position Chr7:178453030-178453127 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 78 - AAGGGUAAUGGAGUGGAUUGA - 98
Stem-loop(if miRNA) --A  GG        U       A  C       C CC          A
   AG  UAAUGGAG GGAUUGA GG GCCAAAA C  UUACUAUUCA A
   ||  |||||||| ||||||| || ||||||| |  ||||||||||
   UC  AUUAUCUC CCUAACU CC CGGUUUU G  AAUGAUAAGU A
CUA  AG        U       C  U       A UA          U
Stem-loop sequence AAGGGUAAUGGAGUGGAUUGAAGGCGCCAAAACCCCUUACUAUUCAAAAUUGAAUAGUAAAUGAUUUUGGCUCCCUCAAUCCUCUCUAUUAGACUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166403.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *|||||||||||||||||=||
targets:93   CCAAUCCACUCCAUUACCUUU   113

1.5 Sequence 4067 from Patent EP2559767 NA coding protein psRNATarget
HI405942.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *|||||||||||||||||=||
targets:93   CCAAUCCACUCCAUUACCUUU   113

1.5 Sequence 4067 from Patent EP2074227 NA coding protein psRNATarget
LQ238072.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *|||||||||||||||||=||
targets:93   CCAAUCCACUCCAUUACCUUU   113

1.5 Sequence 4067 from Patent EP2985353 NA coding protein psRNATarget
JB166411.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:93   CCAAUUCACUCCAUUACCUUU   113

2.5 Sequence 4075 from Patent EP2559767 NA coding protein psRNATarget
HI405950.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:93   CCAAUUCACUCCAUUACCUUU   113

2.5 Sequence 4075 from Patent EP2074227 NA coding protein psRNATarget
LQ238080.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:93   CCAAUUCACUCCAUUACCUUU   113

2.5 Sequence 4075 from Patent EP2985353 NA coding protein psRNATarget
NM_001137008.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:1045   CCAAUUCACUCCAUUACCUUU   1065

2.5 Zea mays calcineurin B-like protein (CBL1), mRNA NA coding protein psRNATarget
BT033702.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:1045   CCAAUUCACUCCAUUACCUUU   1065

2.5 Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds NA coding protein psRNATarget
AY104107.2
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:1293   CCAAUUCACUCCAUUACCUUU   1313

2.5 Zea mays PCO062189 mRNA sequence NA coding protein psRNATarget
EU968858.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  *||||=||||||||||||=||
targets:1152   CCAAUUCACUCCAUUACCUUU   1172

2.5 Zea mays clone 324588 mRNA sequence NA coding protein psRNATarget
HI406069.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:94   UCAAUCCUCUCCAUUACUCUU   114

2.5 Sequence 4194 from Patent EP2074227 NA coding protein psRNATarget
LQ238199.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:94   UCAAUCCUCUCCAUUACUCUU   114

2.5 Sequence 4194 from Patent EP2985353 NA coding protein psRNATarget
JB166530.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:94   UCAAUCCUCUCCAUUACUCUU   114

2.5 Sequence 4194 from Patent EP2559767 NA coding protein psRNATarget
BT036654.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:1047   UCAAUCCUCUCCAUUACUCUU   1067

2.5 Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds NA coding protein psRNATarget
NM_001349849.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:880   UCAAUCCUCUCCAUUACUCUU   900

2.5 Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA NA coding protein psRNATarget
EU952717.1
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:880   UCAAUCCUCUCCAUUACUCUU   900

2.5 Zea mays clone 1287070 zinc finger protein mRNA, complete cds NA coding protein psRNATarget
XM_008654031.2
ncRNA:21   AGUUAGGUGAGGUAAUGGGAA   1
  |||||||*|||||||||=|||
targets:1680   UCAAUCCCCUCCAUUACUCUU   1700

2.5 PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.