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BaseInfo

ncRNA ID novel_zma_miR11081
Species Zea mays
Class miRNA
Genome position Chr7:175459980-175460063 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 22
Mature sequence(if miRNA) 63 - UGAGAACACUAUUUUUCCAAGG - 84
Stem-loop(if miRNA) --   A             C   A         AGCCC    A
  UUG AAAAAUAGUGUUC CAA CACUAUUUU     UAGA A
  ||| ||||||||||||| ||| |||||||||     |||| U
  AAC UUUUUAUCACAAG GUU GUGGUAAAA     AUCU C
GG   C             A   C         ---GA    C
Stem-loop sequence UUGAAAAAAUAGUGUUCCCAAACACUAUUUUAGCCCUAGAAAUCCUCUAAGAAAAUGGUGCUUGAGAACACUAUUUUUCCAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU969078.1
ncRNA:22   GGAACCUUUUUAUCACAAGAGU   1
  **|||||=|||||||||*||||
targets:964   GAUUGGAGAAAUAGUGUCCUCA   985

2.5 Zea mays clone 325948 mRNA sequence NA coding protein psRNATarget
XM_020539776.1
ncRNA:22   GGAACCUUUUUAUCACAAGAGU   1
  **|||||=|||||||||*||||
targets:328   GAUUGGAGAAAUAGUGUCCUCA   349

2.5 PREDICTED: Zea mays uncharacterized LOC100273817 (LOC100273817), transcript variant X15, mRNA NA coding protein psRNATarget