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BaseInfo

ncRNA ID	novel_zma_miR11067
Species	Zea mays
Class	miRNA
Genome position	Chr7:121724514-121724602 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	66 - GCACUCGGCAAAGAACCAAUACCU - 89
Stem-loop(if miRNA)	--   C    CA              ---------        C   GA   GUA UGGU  CUUUGCCGAGUGUU         ACACUCGA AAA  G   ||| ||||  ||||||||||||||         |||||||| |||  G   CAU ACCA  GAAACGGCUCACGA         UGUGAGCU UUU  U UC   A    -A              UACCGGGAC        A   GG
Stem-loop sequence	GUACUGGUCACUUUGCCGAGUGUUACACUCGACAAAGAGGUGGUUUAUCGAGUGUCAGGGCCAUAGCACUCGGCAAAGAACCAAUACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239157.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   ||||*||||||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	0.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   ||||*||||||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	0.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   ||||*||||||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	0.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*||||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	2.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*||||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	2.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*||||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	2.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*||||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*||||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*||||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACG   1   =*||=||||-||||||||||||||| targets:44   GAGUGUUGGCUUCUUUGCCGAGUGC   68 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACG   1   =*||=||||-||||||||||||||| targets:1143   GAGUGUUGGCUUCUUUGCCGAGUGC   1167 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACG   1   =*||=||||-||||||||||||||| targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACG   1   =*||=||||-||||||||||||||| targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   ||--|||***|||||||||||||| targets:11   AG--AUUCCAUCUUUGCCGAGUGC   32 Target Full Sequence	3.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   ||--|||***|||||||||||||| targets:11   AG--AUUCCAUCUUUGCCGAGUGC   32 Target Full Sequence	3.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   ||--|||***|||||||||||||| targets:11   AG--AUUCCAUCUUUGCCGAGUGC   32 Target Full Sequence	3.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*|**|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*|**|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   *|||||*|**|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACG   1   =|**|**||||||||||||||||= targets:584   GGCAAAGGGUUCUUUGCCGAGUGU   607 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:20   UAA-CCAAGAAACGGCUCACG   1   *||-||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	3.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:20   UAA-CCAAGAAACGGCUCACG   1   *||-||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	3.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:20   UAA-CCAAGAAACGGCUCACG   1   *||-||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	3.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget