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BaseInfo

ncRNA ID	novel_zma_miR11065
Species	Zea mays
Class	miRNA
Genome position	Chr7:63516569-63516720 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	129 - AUUCUAUAAAAUUCGUUGGGGCAA - 152
Stem-loop(if miRNA)	--    UG G UU       U         GCACU           CAAA   --C    UUUUU      C   CA  U   GUUU  A G  UUUUAUG GAAUUUGGU     AAGUUGGGUGU    GGC   CUGU     CGGCUU UGG  GU U   ||||  | |  ||||||| |||||||||     |||||||||||    |||   ||||     |||||| |||  || C   CGGG  U C  AAAAUAU CUUAGACCG     UUCGACUCGCA    CCG   GGCG     GUCGAA ACC  CG U AA    GU G UU       -         -ACUU           --AA   UCA    ---UU      A   AC  G
Stem-loop sequence	GUUUUGAGGUUUUUUAUGUGAAUUUGGUGCACUAAGUUGGGUGUCAAAGGCCCUGUUUUUUCGGCUUCUGGCAGUUUCUGGCCACCAAAAGCUGUUGCGGACUGCCAAACGCUCAGCUUUUCAGCCAGAUUCUAUAAAAUUCGUUGGGGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU947367.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   |||||||||||||||||||||||* targets:204   UUGCCCCAACGAAUUUUAUAGAAG   227 Target Full Sequence	1.0	Zea mays clone 341166 mRNA sequence	NA	coding protein	psRNATarget
EZ111561.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   |||||||||||||||||||||||* targets:107   UUGCCCCAACGAAUUUUAUAGAAG   130 Target Full Sequence	1.0	TSA: Zea mays contig47222, mRNA sequence	NA	coding protein	psRNATarget
EU945617.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   |||=|||||||||||||||||||* targets:856   UUGUCCCAACGAAUUUUAUAGAAG   879 Target Full Sequence	1.0	Zea mays clone 279548 mRNA sequence	NA	coding protein	psRNATarget
XM_020537643.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   |||=|||||||||||||||||||* targets:808   UUGUCCCAACGAAUUUUAUAGAAG   831 Target Full Sequence	1.0	PREDICTED: Zea mays 50S ribosomal protein L28, chloroplastic-like (LOC109939456), mRNA	NA	coding protein	psRNATarget
BT063775.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   |||=|||||||||||||||||||* targets:739   UUGUCCCAACGAAUUUUAUAGAAG   762 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0107C03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156123.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   |||=|||||||||||||||||||* targets:739   UUGUCCCAACGAAUUUUAUAGAAG   762 Target Full Sequence	1.0	Zea mays 50S ribosomal protein L28 (LOC100283221), mRNA	NA	coding protein	psRNATarget
BT019132.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ||||=||||=|||||||||||||* targets:32   UUGCUCCAAUGAAUUUUAUAGAAG   55 Target Full Sequence	2.0	Zea mays clone Contig767.F mRNA sequence	NA	coding protein	psRNATarget
BT061432.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ||||||||||||||||||||*||* targets:1117   UUGCCCCAACGAAUUUUAUAAAAG   1140 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0145K17 mRNA, complete cds	NA	coding protein	psRNATarget
EU961827.1	ncRNA:24   AACGGG-GUUGCUUAAAAUAUCUUA   1   |||=||-|||||||||||||||||* targets:1336   UUGUCCUCAACGAAUUUUAUAGAAG   1360 Target Full Sequence	3.0	Zea mays clone 238443 peptidase M48, Ste24p mRNA, complete cds	NA	coding protein	psRNATarget
EU955821.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ||||=|||||||||||||||*||* targets:885   UUGCUCCAACGAAUUUUAUAAAAG   908 Target Full Sequence	2.5	Zea mays clone 1547540 mRNA sequence	NA	coding protein	psRNATarget
EU962416.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ***|||||||||||||*||||||| targets:334   CCACCCCAACGAAUUUGAUAGAAU   357 Target Full Sequence	1.5	Zea mays clone 242472 hypersensitive-induced response protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551404.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ||*=||*||||||||||||||||* targets:1586   UUAUCCAAACGAAUUUUAUAGAAG   1609 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100275481 (si606071d07), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001177137.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ||*|=|*||||||||||||||||* targets:1330   UUACUCAAACGAAUUUUAUAGAAG   1353 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384648 (LOC100384648), mRNA	NA	coding protein	psRNATarget
BT083850.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ||*|=|*||||||||||||||||* targets:1330   UUACUCAAACGAAUUUUAUAGAAG   1353 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0046M08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650054.2	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ***|||||||*|||||*||||||| targets:347   CCCCCCCAACCAAUUUGAUAGAAU   370 Target Full Sequence	2.5	PREDICTED: Zea mays hypersensitive induced reaction 3 (hir3), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650056.2	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ***|||||||*|||||*||||||| targets:305   CCCCCCCAACCAAUUUGAUAGAAU   328 Target Full Sequence	2.5	PREDICTED: Zea mays hypersensitive induced reaction 3 (hir3), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT042166.1	ncRNA:24   AACGGGGUUGCUUAAAAUAUCUUA   1   ***|||||||*|||||*||||||| targets:298   CCCCCCCAACCAAUUUGAUAGAAU   321 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0150A17 mRNA, complete cds	NA	coding protein	psRNATarget