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BaseInfo

ncRNA ID	novel_zma_miR11060
Species	Zea mays
Class	miRNA
Genome position	Chr7:104891625-104891789 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	142 - AGAGAACGAUCCGGUCAGAGAACC - 165
Stem-loop(if miRNA)	--     -     UC         UUCUCUCUUAACGGUAAU       - ---   GU GA        U  C   C    UUCUAUU      U   UUCUC GACUG  UUGUUCUCU                  UGCGAGC C   CGC  G  ACAUCUGU UA UUA UGCA       GAAUGG G   ||||| |||||  |||||||||                  ||||||| |   |||  |  |||||||| || ||| ||||       ||||||   AAGAG CUGGC  AGCAAGAGA                  ACGCUCG G   GUG  U  UGUAGGUA AU AAU AUGU       CUUGUC U CC     A     CU         -----------------U       C UUU   UG -A        U  A   U    ----UUU      A
Stem-loop sequence	UUCUCGACUGUCUUGUUCUCUUUCUCUCUUAACGGUAAUUGCGAGCCCGCGUGGAACAUCUGUUUACUUACUGCAUUCUAUUGAAUGGUGUACUGUUCUUUUGUAUUAAAUAUAUGGAUGUAUGUGUGUUUGCGCUCGCAUAGAGAACGAUCCGGUCAGAGAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU951429.1	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   ||*|||=*|||||||||||||||| targets:174   GGCUCUUCGACCGGAUCGUUCUCU   197 Target Full Sequence	2.0	Zea mays clone 701806 mRNA sequence	NA	coding protein	psRNATarget
NM_001176512.1	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   |**|||||||=|||||=||||||| targets:1035   GCAUCUCUGAUCGGAUUGUUCUCU   1058 Target Full Sequence	2.5	Zea mays Putative alcohol dehydrogenase superfamily protein (LOC100383885), mRNA	NA	coding protein	psRNATarget
BT068538.1	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   |**|||||||=|||||=||||||| targets:1035   GCAUCUCUGAUCGGAUUGUUCUCU   1058 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0291B03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196985.1	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   ||*|||=*|||||||||||||||| targets:298   GGCUCUUCGACCGGAUCGUUCUCU   321 Target Full Sequence	2.0	Zea mays uncharacterized LOC100502507 (LOC100502507), mRNA	NA	coding protein	psRNATarget
BT088387.2	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   ||*|||=*|||||||||||||||| targets:298   GGCUCUUCGACCGGAUCGUUCUCU   321 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0170G09 mRNA, complete cds	NA	coding protein	psRNATarget
EU940916.1	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   ||*|||=*|||||||||||||||| targets:1696   GGCUCUUCGACCGGAUCGUUCUCU   1719 Target Full Sequence	2.0	Zea mays clone 1212834 mRNA sequence	NA	coding protein	psRNATarget
XM_008653626.1	ncRNA:24   CCAAGAGACUGGCCUAGCAAGAGA   1   ****||||||=||||||||||*|| targets:1474   AACCCUCUGAUCGGAUCGUUCGCU   1497 Target Full Sequence	2.5	PREDICTED: Zea mays nucleosome/chromatin assembly factor 104 (nfc104a), transcript variant X2, mRNA	NA	coding protein	psRNATarget