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BaseInfo

ncRNA ID novel_zma_miR11053
Species Zea mays
Class miRNA
Genome position Chr6:46640979-46641094 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - AUCCCCGUCGGCCAGAGCAAAGGC - 24
Stem-loop(if miRNA) --AUC                     C    ----AG          AUGCC          
     CCCGUCGGCCAGAGCAAAGGC GGCG      AGUUAACUUA     CGUUGGCUGCG
     ||||||||||||||||||||| ||||      ||||||||||     ||||||||||G
     GGGCAGCCGGUCUCGUUUCCG CUGC      UCAAUUGAGU     GCAGCCGAUGG
AUUGA                     A    CCUUAA          -----          
Stem-loop sequence AUCCCCGUCGGCCAGAGCAAAGGCCGGCGAGAGUUAACUUAAUGCCCGUUGGCUGCGGGGUAGCCGACGUGAGUUAACUAAUUCCCGUCAGCCUUUGCUCUGGCCGACGGGAGUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008655791.1
ncRNA:24   CGGAAACGAGACCGGCUGCCCCUA   1
  |||||||||||||||||=||||||
targets:25   GCCUUUGCUCUGGCCGAUGGGGAU   48

1.5 PREDICTED: Zea mays formin-like protein 5 (LOC103634209), mRNA NA coding protein psRNATarget
XM_008682560.2
ncRNA:24   CGGAAACGAGACCGGCUGCCCCUA   1
  ||||*|||||||||||||||||||
targets:25   GCCUAUGCUCUGGCCGACGGGGAU   48

0.0 PREDICTED: Zea mays submaxillary gland androgen-regulated protein 3A-like (LOC103655885), mRNA NA coding protein psRNATarget
XM_008655952.2
ncRNA:24   CGGA-----AACGAGACCGGCUGCCCCUA   1
  ||||-----||||||*||||||||||||*
targets:1261   GCCUCUGUAUUGCUCAGGCCGACGGGGAC   1289

2.0 PREDICTED: Zea mays probable protein phosphatase 2C 31 (LOC103634426), mRNA NA coding protein psRNATarget