Search result

BaseInfo

ncRNA ID	osa-miRf10701-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - GCCCGUCACAGAUGAGUCAUCCGU - NA
Stem-loop(if miRNA)	A      C  A          AC         A   -GG    -   U AG GCCCGU AC GAUGACUCAU  GUGACGGGC UUA   UAAU CUC A || |||||| || ||||||||||  ||||||||| |||   |||| ||| UC CGGGCA UG CUACUGAGUA  CACUGCCCG GAU   AUUA GGG U   C      U  C          GA         G   AUG    C   C
Stem-loop sequence	AGAGCCCGUCACAGAUGACUCAUACGUGACGGGCAUUAGGUAAUCUCUAUCGGGCAUUAGUAUAGGGCCCGUCACAGAUGAGUCAUCCGUUACGGGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:24   UGCCUACUGAGUAGACACUGCCCG   1   |=*|||||*||||||*|||||||| targets:1579   AUUGAUGAGUCAUCUAUGACGGGC   1602 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
XM_015761270.1	ncRNA:24   UGCCUACUGAGUAGACACUGCCCG   1   ||*||||||||||||||||||||= targets:12   ACUGAUGACUCAUCUGUGACGGGU   35 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270068 (LOC9270068), mRNA	uncharacterized LOC9270068(LOC9270068)	coding protein	psRNATarget
AK068923.1	ncRNA:24   UGCCUACUGAGUAGACACUGCCCG   1   ||*|||||||||||*||||||||| targets:1229   ACAGAUGACUCAUCAGUGACGGGC   1252 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK119390.1	ncRNA:24   UGCCUACUGAGUAGACACUGCCCG   1   ***|||||||||||*||||||||| targets:3073   UGAGAUGACUCAUCAGUGACGGGC   3096 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-132-C09, full insert sequence	NA	coding protein	psRNATarget
AK063612.1	ncRNA:24   UGCCUACUGAGUAGACACUGCCCG   1   |**|||||*||||||*|||||||| targets:947   AAAGAUGAGUCAUCUCUGACGGGC   970 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-118-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015779008.1	ncRNA:24   UG-CCUACUGAGUAGACACUGCCCG   1   ||-||=||||*||*||||||||||| targets:1370   ACAGGGUGACCCACCUGUGACGGGC   1394 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280566 (LOC107280566), transcript variant X3, mRNA	uncharacterized LOC107280566(LOC107280566)	coding protein	psRNATarget
XM_015779007.1	ncRNA:24   UG-CCUACUGAGUAGACACUGCCCG   1   ||-||=||||*||*||||||||||| targets:3240   ACAGGGUGACCCACCUGUGACGGGC   3264 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280566 (LOC107280566), transcript variant X2, mRNA	uncharacterized LOC107280566(LOC107280566)	coding protein	psRNATarget
XM_015779006.1	ncRNA:24   UG-CCUACUGAGUAGACACUGCCCG   1   ||-||=||||*||*||||||||||| targets:3331   ACAGGGUGACCCACCUGUGACGGGC   3355 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280566 (LOC107280566), transcript variant X1, mRNA	uncharacterized LOC107280566(LOC107280566)	coding protein	psRNATarget
AK288547.1	ncRNA:23   GCCUACUGAGUAGACACUGCCCG   1   ***|**|*||||||||||||||| targets:1   AUCAGUAGUCAUCUGUGACGGGC   23 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090046I18, full insert sequence	NA	coding protein	psRNATarget