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BaseInfo

ncRNA ID	novel_zma_miR11039
Species	Zea mays
Class	miRNA
Genome position	Chr6:60595749-60595833 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - CGAAGACCUCGUAGUGCCGGCACC - 24
Stem-loop(if miRNA)	--    -U   C  AG           UUGAA    UC   UUCA   UGCU  CAC AC  GGUCUUCGGCC     AAUU  ACG    A   ||||  ||| ||  |||||||||||     ||||  |||    A   ACGG  GUG UG  CCAGAAGCUGG     UUAG  UGC    G CC    CC   A  CU           -----    UC   UCUU
Stem-loop sequence	UGCUUCACCACAGGGUCUUCGGCCUUGAAAAUUUCACGUUCAAAGUUCUCGUCUGAUUGGUCGAAGACCUCGUAGUGCCGGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241566.1	ncRNA:24   CCACGGCCGUGAUGCUCCAGAAGC   1   ||||||||||||*||||||||||| targets:7   GGUGCCGGCACUUCGAGGUCUUCG   30 Target Full Sequence	1.5	Sequence 7561 from Patent EP2985353	NA	coding protein	psRNATarget
JB169897.1	ncRNA:24   CCACGGCCGUGAUGCUCCAGAAGC   1   ||||||||||||*||||||||||| targets:7   GGUGCCGGCACUUCGAGGUCUUCG   30 Target Full Sequence	1.5	Sequence 7561 from Patent EP2559767	NA	coding protein	psRNATarget
HI409436.1	ncRNA:24   CCACGGCCGUGAUGCUCCAGAAGC   1   ||||||||||||*||||||||||| targets:7   GGUGCCGGCACUUCGAGGUCUUCG   30 Target Full Sequence	1.5	Sequence 7561 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001165669.1	ncRNA:24   CCA-CGGCCGUGAUGCUCCAGAAGC   1   |||-||||*=||||||||||||||* targets:1137   GGUUGCCGCUACUACGAGGUCUUCC   1161 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304220 (LOC100304220), mRNA	NA	coding protein	psRNATarget
BT060499.1	ncRNA:24   CCA-CGGCCGUGAUGCUCCAGAAGC   1   |||-||||*=||||||||||||||* targets:1137   GGUUGCCGCUACUACGAGGUCUUCC   1161 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0007J22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150174.2	ncRNA:24   CCAC-GGCCGUGAUGCUCCAGAAGC   1   |||*-|||*=||||||||||||||* targets:1337   GGUUACCGCUACUACGAGGUCUUCC   1361 Target Full Sequence	3.0	Zea mays uncharacterized LOC100276368 (LOC100276368), mRNA	NA	coding protein	psRNATarget
EU961634.1	ncRNA:24   CCAC-GGCCGUGAUGCUCCAGAAGC   1   |||*-|||*=||||||||||||||* targets:1369   GGUUACCGCUACUACGAGGUCUUCC   1393 Target Full Sequence	3.0	Zea mays clone 237212 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget