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BaseInfo

ncRNA ID novel_zma_miR11036
Species Zea mays
Class miRNA
Genome position Chr6:30213626-30213745 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 23
Mature sequence(if miRNA) 98 - UGAAGCAUCUGGACUUGCACCUG - 120
Stem-loop(if miRNA) --   AC   - -   -  -     -   U   U     CAGCA            --AC      A
  GGU  GCA G CCA AU CUUCG GUG CCA GGGAU     GAGUGGGCAAAG    UGAGGG U
  |||  ||| | ||| || ||||| ||| ||| |||||     ||||||||||||    |||||| G
  CCA  CGU C GGU UA GAAGU CAC GGU CUCUG     UUCGCCUGUUUU    ACUCCC G
GU   --   U A   C  C     U   -   U     -----            AAGU      C
Stem-loop sequence GGUACGCAGCCAAUCUUCGGUGUCCAUGGGAUCAGCAGAGUGGGCAAAGACUGAGGGAUGGCCCCUCAUGAAUUUUGUCCGCUUGUCUCUUGGCACUUGAAGCAUCUGGACUUGCACCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ079276.1
ncRNA:23   GUCCACGUUCAGGUCUACGAAGU   1
  ||*|*|||=|||||||||||||*
targets:79   CACGGGCAGGUCCAGAUGCUUCU   101

3.0 TSA: Zea mays contig14915, mRNA sequence NA coding protein psRNATarget