Search result

BaseInfo

ncRNA ID	osa-miRf10700-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - CCGGUUGGUAACACCAACCGGGA - NA
Stem-loop(if miRNA)	U          A     A             U       CU  UUUAGUCCCG UUGGU UUAUCAACCGGGA UAAAGAU  A  |||||||||| ||||| ||||||||||||| |||||||  A  AAAUCAGGGC AACCA AAUGGUUGGCCCU AUUUCUA  A G          C     C             C       AU
Stem-loop sequence	UUUUAGUCCCGAUUGGUAUUAUCAACCGGGAUUAAAGAUCUAAAUAAUCUUUACUCCCGGUUGGUAACACCAACCGGGACUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||||||||||||||||||||||| targets:156   UCCCGGUUGGUGUUACCAACCGG   178 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   |||||||||||*||||||||||| targets:113   UCCCGGUUGGUUUUACCAACCGG   135 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||||||||||||||||||||||| targets:1839   UCCCGGUUGGUGUUACCAACCGG   1861 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:23   AGGGCCAACCACAAUGGUUGG-CC   1   |||||||||||||||||||||-|| targets:1385   UCCCGGUUGGUGUUACCAACCUGG   1408 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
XM_015758314.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||||||||*|||||||||||||| targets:915   UCCCGGUUUGUGUUACCAACCGG   937 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
XM_015755226.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   |||||||||*||||||||||||| targets:79   UCCCGGUUGAUGUUACCAACCGG   101 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288424.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||||||||*|||||||||||||| targets:2390   UCCCGGUUAGUGUUACCAACCGG   2412 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||||*|||||||||||||||||| targets:2397   UCCCCGUUGGUGUUACCAACCGG   2419 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   *|||||||||||*|||||||||| targets:52   CCCCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
JB164979.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   *|||||||||||*|||||||||| targets:52   CCCCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
HI404518.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   *|||||||||||*|||||||||| targets:52   CCCCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
HI404286.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||=||*||||||||||||||=|| targets:3   UCUCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||=||*||||||||||||||=|| targets:3   UCUCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
JB164747.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||=||*||||||||||||||=|| targets:3   UCUCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
AK119916.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   ||=||||||*||||||=|||||| targets:373   UCUCGGUUGAUGUUACUAACCGG   395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F10, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:23   AGGGCCAACCACAAUGGUUGGCC   1   **||||||*||||||=||||||| targets:1174   CACCGGUUUGUGUUAUCAACCGG   1196 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget