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BaseInfo

ncRNA ID novel_zma_miR11024
Species Zea mays
Class miRNA
Genome position Chr6:105550470-105550611 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 1 - UCUAGAUCUAACGGACCAAGA - 21
Stem-loop(if miRNA) --   A   A        U    CC          -   AUCG    UUG    GGG      U  AAA     A
  UUG UCC UUAGAUCU AGAU  AACCGUAUGU GUA    UGGU   UUAG   CUUUUU AU   GCUAC C
  ||| ||| |||||||| ||||  |||||||||| |||    ||||   ||||   |||||| ||   ||||| A
  AAC AGG AAUCUAGA UCUA  UUGGCAUACA UAU    AUCG   AAUU   GGAGAG UG   UGAUG A
AG   C   C        -    UA          G   --AA    UAA    --A      -  --G     G
Stem-loop sequence UUGAUCCAUUAGAUCUUAGAUCCAACCGUAUGUGUAAUCGUGGUUUGUUAGGGGCUUUUUUAUAAAGCUACACAAGGUAGUGGUGAGAGGAUUAAAAUGCUAAAUAUGACAUACGGUUAUAUCUAGAUCUAACGGACCAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163419.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |||||||=|||||||||||||
targets:8   UCUUGGUUCGUUAGAUCUAGA   28

1.0 Sequence 1083 from Patent EP2559767 NA coding protein psRNATarget
HI402951.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |||||||=|||||||||||||
targets:8   UCUUGGUUCGUUAGAUCUAGA   28

1.0 Sequence 1076 from Patent EP2074227 NA coding protein psRNATarget
JB163412.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |||||||=|||||||||||||
targets:8   UCUUGGUUCGUUAGAUCUAGA   28

1.0 Sequence 1076 from Patent EP2559767 NA coding protein psRNATarget
LQ235081.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |||||||=|||||||||||||
targets:8   UCUUGGUUCGUUAGAUCUAGA   28

1.0 Sequence 1076 from Patent EP2985353 NA coding protein psRNATarget
LQ235088.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |||||||=|||||||||||||
targets:8   UCUUGGUUCGUUAGAUCUAGA   28

1.0 Sequence 1083 from Patent EP2985353 NA coding protein psRNATarget
HI402958.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |||||||=|||||||||||||
targets:8   UCUUGGUUCGUUAGAUCUAGA   28

1.0 Sequence 1083 from Patent EP2074227 NA coding protein psRNATarget
XM_020551156.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=||||||||||||||=||||
targets:743   UUUUGGUCCGUUAGAUUUAGA   763

1.5 PREDICTED: Zea mays SKP1-like protein 1B (LOC103652383), mRNA NA coding protein psRNATarget
JB170558.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||*|||||||||||||||
targets:50   UUUUGAUCCGUUAGAUCUAGA   70

1.0 Sequence 8222 from Patent EP2559767 NA coding protein psRNATarget
HI410097.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||*|||||||||||||||
targets:50   UUUUGAUCCGUUAGAUCUAGA   70

1.0 Sequence 8222 from Patent EP2074227 NA coding protein psRNATarget
LQ242227.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||*|||||||||||||||
targets:50   UUUUGAUCCGUUAGAUCUAGA   70

1.0 Sequence 8222 from Patent EP2985353 NA coding protein psRNATarget
EU954095.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||||||||||||*|||||
targets:737   UUUUGGUCCGUUAGACCUAGA   757

1.5 Zea mays clone 1455074 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149251.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||||||||||||*|||||
targets:737   UUUUGGUCCGUUAGACCUAGA   757

1.5 Zea mays hypothetical protein (LOC100275056), mRNA NA coding protein psRNATarget
XM_020543506.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||*|||||||||||||||
targets:677   UUUUGAUCCGUUAGAUCUAGA   697

1.0 PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA NA coding protein psRNATarget
EU956751.1
ncRNA:21   AGAACCAGGCAAUCUAGAUCU   1
  |=|||*|||||||||||||||
targets:859   UUUUGAUCCGUUAGAUCUAGA   879

1.0 Zea mays clone 1572581 mRNA sequence NA coding protein psRNATarget
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