Search result

BaseInfo

ncRNA ID	novel_zma_miR11018
Species	Zea mays
Class	miRNA
Genome position	Chr6:121114483-121114687 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	185 - CAUAAUAUCAUAUGUAGAGGC - 205
Stem-loop(if miRNA)	--CAUA              G C                          U        U  C                                -     - U       AUAUCAUAUGUAGA G UGUGAUAAAAAUUUGAGAAAGUUUCG GAAAGUUG GA GUACUAUGUGUAGAAACCUAGGAGAACUACAU UGAAA C C       |||||||||||||| | |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||| | U       UAUAGUAUAUAUCU C ACACUAUUUUUAAAUUCUUUCAAAGC CUUUCAAC CU CAUGAUACACAUCUUUGGAUCCUCUUGAUGUG ACUUU G A CAUUAC              A A                          U        U  A                                U     A U
Stem-loop sequence	CAUAAUAUCAUAUGUAGAGGCUGUGAUAAAAAUUUGAGAAAGUUUCGUGAAAGUUGUGACGUACUAUGUGUAGAAACCUAGGAGAACUACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCCUAGGUUUCUACACAUAGUACAUCUCAACUUUCUCGAAACUUUCUUAAAUUUUUAUCACAACAUCUAUAUAUGAUAUCAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ089840.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   |||||||||||||||||*||| targets:4   GCCUCUACAUAUGAUAUCAUG   24 Target Full Sequence	1.5	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   |||||||||||||||||*||* targets:208   GCCUCUACAUAUGAUAUCAUC   228 Target Full Sequence	2.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   |||||||||||||||||*||* targets:208   GCCUCUACAUAUGAUAUCAUC   228 Target Full Sequence	2.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   |||||||||||||||||*||* targets:208   GCCUCUACAUAUGAUAUCAUC   228 Target Full Sequence	2.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
HI403222.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   *||||||=|||||||||*||| targets:202   ACCUCUAUAUAUGAUAUCAUG   222 Target Full Sequence	2.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   *||||||=|||||||||*||| targets:202   ACCUCUAUAUAUGAUAUCAUG   222 Target Full Sequence	2.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   *||||||=|||||||||*||| targets:202   ACCUCUAUAUAUGAUAUCAUG   222 Target Full Sequence	2.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546375.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|||||||||||||||||* targets:1801   AAGUCUACAUAUGAUAUUAUU   1821 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear cap-binding protein subunit 1 (LOC100384700), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657372.2	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|||||||||||||||||* targets:1672   AAGUCUACAUAUGAUAUUAUU   1692 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear cap-binding protein subunit 1 (LOC100384700), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KM399006.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|||||||||||||||||* targets:1381   AAGUCUACAUAUGAUAUUAUU   1401 Target Full Sequence	2.0	Zea mays ABH1 mRNA, partial cds	NA	coding protein	psRNATarget
EZ077420.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|||||||||||||||||* targets:130   AAGUCUACAUAUGAUAUUAUU   150 Target Full Sequence	2.0	TSA: Zea mays contig13057, mRNA sequence	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   |=|*|||||||||||||*||| targets:4027   GUCGCUACAUAUGAUAUCAUG   4047 Target Full Sequence	2.5	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
JB163681.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   *|||*||||||||||||*||| targets:202   ACCUGUACAUAUGAUAUCAUG   222 Target Full Sequence	2.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   *|||*||||||||||||*||| targets:202   ACCUGUACAUAUGAUAUCAUG   222 Target Full Sequence	2.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   *|||*||||||||||||*||| targets:202   ACCUGUACAUAUGAUAUCAUG   222 Target Full Sequence	2.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
EU957830.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|*|||||||||||||||| targets:2302   UGAUAUACAUAUGAUAUUAUG   2322 Target Full Sequence	2.0	Zea mays clone 1624922 mRNA sequence	NA	coding protein	psRNATarget
NM_001323613.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|*|||||||||||||||| targets:2175   UGAUAUACAUAUGAUAUUAUG   2195 Target Full Sequence	2.0	Zea mays lysine-specific histone demethylase 1 (LOC101027113), transcript variant 1, mRNA	NA	coding protein	psRNATarget
NM_001279546.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|*|||||||||||||||| targets:1968   UGAUAUACAUAUGAUAUUAUG   1988 Target Full Sequence	2.0	Zea mays lysine-specific histone demethylase 1 (LOC101027113), mRNA	NA	coding protein	psRNATarget
EU957883.1	ncRNA:21   CGGAGAUGUAUACUAUAAUAC   1   ***|*|||||||||||||||| targets:1968   UGAUAUACAUAUGAUAUUAUG   1988 Target Full Sequence	2.0	Zea mays clone 1629499 lysine-specific histone demethylase 1 mRNA, complete cds	NA	coding protein	psRNATarget