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BaseInfo

ncRNA ID	novel_zma_miR11017
Species	Zea mays
Class	miRNA
Genome position	Chr6:125689493-125689583 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	68 - UGAUCACCCACCCUGAAAUGACUU - 91
Stem-loop(if miRNA)	--   U         U            CA   UUAAGUUAUUGGU   UGA CACCCACCC GAAAUGACUUAA  AAU             G   ||| ||||||||| ||||||||||||  |||   ACU GUGGGUGGG CUUUACUGAAUU  AUU             A CU   C         U            -U   ACUGAAUGUUUCU
Stem-loop sequence	UGAUCACCCACCCUGAAAUGACUUAACAAAUUUAAGUUAUUGGUGAUCUUUGUAAGUCAUUAUUUAAGUCAUUUCUGGGUGGGUGCUCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001154416.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   ||**|||||||||*|||||||||| targets:2088   AAACCAUUUCAGGAUGGGUGAUCA   2111 Target Full Sequence	1.5	Zea mays zinc finger CCCH type domain-containing protein ZFN-like 3 (LOC100281498), mRNA	NA	coding protein	psRNATarget
EU956916.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   ||**|||||||||*|||||||||| targets:2088   AAACCAUUUCAGGAUGGGUGAUCA   2111 Target Full Sequence	1.5	Zea mays clone 1577403 zinc finger CCCH type domain-containing protein ZFN-like 3 mRNA, complete cds	NA	coding protein	psRNATarget
FJ873684.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1141   UGACAAUUUCAGGGUGGGUGUUCA   1164 Target Full Sequence	1.5	Zea mays genotype C100-6 MATE transporter 2 mRNA, complete cds	NA	coding protein	psRNATarget
FJ873685.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1162   UGACAAUUUCAGGGUGGGUGUUCA   1185 Target Full Sequence	1.5	Zea mays genotype L53 MATE transporter 2 mRNA, complete cds	NA	coding protein	psRNATarget
FJ873686.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1162   UGACAAUUUCAGGGUGGGUGUUCA   1185 Target Full Sequence	1.5	Zea mays genotype Al237 MATE transporter 2 mRNA, complete cds	NA	coding protein	psRNATarget
BT085411.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1018   UGACAAUUUCAGGGUGGGUGUUCA   1041 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008I07 mRNA, complete cds	NA	coding protein	psRNATarget
BT040418.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1089   UGACAAUUUCAGGGUGGGUGUUCA   1112 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0090C23 mRNA, complete cds	NA	coding protein	psRNATarget
EU957561.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1222   UGACAAUUUCAGGGUGGGUGUUCA   1245 Target Full Sequence	1.5	Zea mays clone 1597236 transparent testa 12 protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154612.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   *=***|||||||||||||||*||| targets:1222   UGACAAUUUCAGGGUGGGUGUUCA   1245 Target Full Sequence	1.5	Zea mays transparent testa 12 protein (LOC100281692), mRNA	NA	coding protein	psRNATarget
BT067868.1	ncRNA:24   UUCAGUAAAGUCCCACCCACUAGU   1   ||**|||*|||||*|||||||||| targets:2094   AAACCAUCUCAGGAUGGGUGAUCA   2117 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176C01 mRNA, complete cds	NA	coding protein	psRNATarget