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BaseInfo

ncRNA ID	novel_zma_miR11011
Species	Zea mays
Class	miRNA
Genome position	Chr6:145157910-145157965 [-]
Reference genome	RefGen_v4
Source	SRR5100248;SRR5100255
Length	23
Mature sequence(if miRNA)	1 - CACUCGGCAAAGAACUUUAACUU - 23
Stem-loop(if miRNA)	--AAA   A               GAGG      AAA UUCUUUGCUGAGUGC    U      ||| |||||||||||||||      UUU AAGAAACGGCUCACG    C UUCAA   C               GGUG
Stem-loop sequence	AAAAAAAUUCUUUGCUGAGUGCGAGGUCGUGGGCACUCGGCAAAGAACUUUAACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166554.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUG   94 Target Full Sequence	2.0	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
HI406093.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUG   94 Target Full Sequence	2.0	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUG   94 Target Full Sequence	2.0	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
BT065228.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:894   AAGUAAAUGUUCUUUGCCGAGUG   916 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:894   AAGUAAAUGUUCUUUGCCGAGUG   916 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
EU942429.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:905   AAGUAAAUGUUCUUUGCCGAGUG   927 Target Full Sequence	2.0	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1313   AAGUAAAUGUUCUUUGCCGAGUG   1335 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1317   AAGUAAAUGUUCUUUGCCGAGUG   1339 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1392   AAGUAAAUGUUCUUUGCCGAGUG   1414 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1397   AAGUAAAUGUUCUUUGCCGAGUG   1419 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1397   AAGUAAAUGUUCUUUGCCGAGUG   1419 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1402   AAGUAAAUGUUCUUUGCCGAGUG   1424 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1443   AAGUAAAUGUUCUUUGCCGAGUG   1465 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1526   AAGUAAAUGUUCUUUGCCGAGUG   1548 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1788   AAGUAAAUGUUCUUUGCCGAGUG   1810 Target Full Sequence	2.0	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
BT036012.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1777   AAGUAAAUGUUCUUUGCCGAGUG   1799 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:23   UUCAAUUUCAAGAAACGGCUCAC   1   ||||*||*||||||||||||||| targets:1777   AAGUAAAUGUUCUUUGCCGAGUG   1799 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget
HI406685.1	ncRNA:23   UUCAAU-UUCAAGAAACGGCUCAC   1   **|*||-|=||||||||||||||| targets:36   CCGGUAUAGGUUCUUUGCCGAGUG   59 Target Full Sequence	3.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:23   UUCAAU-UUCAAGAAACGGCUCAC   1   **|*||-|=||||||||||||||| targets:36   CCGGUAUAGGUUCUUUGCCGAGUG   59 Target Full Sequence	3.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:23   UUCAAU-UUCAAGAAACGGCUCAC   1   **|*||-|=||||||||||||||| targets:36   CCGGUAUAGGUUCUUUGCCGAGUG   59 Target Full Sequence	3.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:23   UUCAAU-UUCAAGAAACGGCUCAC   1   **|*||-|=||||||||||||||| targets:173   CCGGUAUAGGUUCUUUGCCGAGUG   196 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:23   UUCAAU-UUCAAGAAACGGCUCAC   1   **|*||-|=||||||||||||||| targets:173   CCGGUAUAGGUUCUUUGCCGAGUG   196 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:23   UUCAAU-UUCAAGAAACGGCUCAC   1   **|*||-|=||||||||||||||| targets:173   CCGGUAUAGGUUCUUUGCCGAGUG   196 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget