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BaseInfo

ncRNA ID	novel_zma_miR10990
Species	Zea mays
Class	miRNA
Genome position	Chr7:11706356-11706475 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - ACAUUUAGACACGAACCAAACAGC - 24
Stem-loop(if miRNA)	--           A  A    -CU                ACUUUUCUGCCUA         C   A   UGUUUGGUUCG UG CUAA   UGCCACACUUUGCCUA             AGGUUAGUU UUC A   ||||||||||| || ||||   ||||||||||||||||             ||||||||| ||| U   ACAAACCAAGC AC GAUU   ACGGUGUGAAACGGAU             UCCAAUCAG AAG U CG           -  A    UAC                -------------         C   C
Stem-loop sequence	UGUUUGGUUCGAUGACUAACUUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGACACGAACCAAACAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967316.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   |||||||||||||||*|||||||| targets:483   GCUGUUUGGUUCGUGGCUAAAUGU   506 Target Full Sequence	1.5	Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
AY104775.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   |||||||||||||||*|||||||| targets:548   GCUGUUUGGUUCGUGGCUAAAUGU   571 Target Full Sequence	1.5	Zea mays PCO061308 mRNA sequence	NA	coding protein	psRNATarget
NM_001177034.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   ||||||||||||||*||||||||| targets:524   GCUGUUUGGUUCGUAUCUAAAUGU   547 Target Full Sequence	1.5	Zea mays putative LRR receptor-like serine/threonine-protein kinase (LOC100384510), mRNA	NA	coding protein	psRNATarget
BT083538.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   ||||||||||||||*||||||||| targets:524   GCUGUUUGGUUCGUAUCUAAAUGU   547 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0009D08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649194.2	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   |||||||||||||||*|||||||| targets:1014   GCUGUUUGGUUCGUGGCUAAAUGU   1037 Target Full Sequence	1.5	PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035068.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   |||||||||||||||*|||||||| targets:1154   GCUGUUUGGUUCGUGGCUAAAUGU   1177 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138873.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   |||||||||||||||*|||||||| targets:1155   GCUGUUUGGUUCGUGGCUAAAUGU   1178 Target Full Sequence	1.5	Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA	NA	coding protein	psRNATarget
BT036147.1	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   |||||||||||||||*|||||||| targets:1155   GCUGUUUGGUUCGUGGCUAAAUGU   1178 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645942.2	ncRNA:24   CGACAAACCAAGCACAGAUUUACA   1   ||||||||||||||*||||||||| targets:3162   GCUGUUUGGUUCGUAUCUAAAUGU   3185 Target Full Sequence	1.5	PREDICTED: Zea mays putative LRR receptor-like serine/threonine-protein kinase (LOC100384510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111895.1	ncRNA:24   CG-ACAAACCAAGCACAGAUUUACA   1   ||-||||||*||||||*|||||||| targets:260   GCAUGUUUGAUUCGUGACUAAAUGU   284 Target Full Sequence	2.5	Zea mays CL41465_1 mRNA sequence	NA	coding protein	psRNATarget