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BaseInfo

ncRNA ID novel_zma_miR10962
Species Zea mays
Class miRNA
Genome position Chr5:7706836-7706919 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 64 - UUAGGCUUUGUUUGGGUACUC - 84
Stem-loop(if miRNA) --UU   CU                   U          A A
    AGG  UUGUUUGGGUACUCUAGUA UCACCUCAAU C U
    |||  ||||||||||||||||||| |||||||||| |
    UCC  AACAAACUUAUGAGAUCAU AGUGGGGUUA G G
GAAU   AG                   U          G U
Stem-loop sequence UUAGGCUUUGUUUGGGUACUCUAGUAUUCACCUCAAUACAUGUGGAUUGGGGUGAUUACUAGAGUAUUCAAACAAGACCUUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU960123.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  |||||=|||||||||||||||
targets:1598   GAGUAUCCAAACAAAGCCUAA   1618

1.0 Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds NA coding protein psRNATarget
BT019026.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  |||||=|||||||||||||||
targets:972   GAGUAUCCAAACAAAGCCUAA   992

1.0 Zea mays clone Contig531.F mRNA sequence NA coding protein psRNATarget
EU944570.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  |||||=|||||||||||||||
targets:751   GAGUAUCCAAACAAAGCCUAA   771

1.0 Zea mays clone 222723 mRNA sequence NA coding protein psRNATarget
EZ107838.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  |||||*|||||||||||||||
targets:90   GAGUAACCAAACAAAGCCUAA   110

1.0 TSA: Zea mays contig43496, mRNA sequence NA coding protein psRNATarget
EZ067729.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *||||=|=|||||||||||||
targets:78   AAGUAUCUAAACAAAGCCUAA   98

2.0 TSA: Zea mays contig03364, mRNA sequence NA coding protein psRNATarget
XM_008650840.2
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  ||||||=||||||||||||*|
targets:3729   GAGUACUCAAACAAAGCCUUA   3749

2.5 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
BT085111.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  |||||*|||||||||||||=|
targets:1235   GAGUAACCAAACAAAGCCUGA   1255

2.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
XM_020547680.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1752   AAUUACCCAAACAAAGCCUAA   1772

1.0 PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547679.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1739   AAUUACCCAAACAAAGCCUAA   1759

1.0 PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA NA coding protein psRNATarget
EU962737.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1718   AAUUACCCAAACAAAGCCUAA   1738

1.0 Zea mays clone 245096 mRNA sequence NA coding protein psRNATarget
BT055962.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1697   AAUUACCCAAACAAAGCCUAA   1717

1.0 Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds NA coding protein psRNATarget
NM_001153225.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1697   AAUUACCCAAACAAAGCCUAA   1717

1.0 Zea mays choline/ethanolamine kinase (LOC100280298), mRNA NA coding protein psRNATarget
BT066939.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1565   AAUUACCCAAACAAAGCCUAA   1585

1.0 Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds NA coding protein psRNATarget
BT053958.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|*||||||||||||||||||
targets:1491   AAUUACCCAAACAAAGCCUAA   1511

1.0 Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds NA coding protein psRNATarget
XM_020540612.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|||||=|||||||||*||||
targets:1801   AAGUACUCAAACAAAGACUAA   1821

2.5 PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA NA coding protein psRNATarget
EU955100.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|||||=|||||||||*||||
targets:732   AAGUACUCAAACAAAGACUAA   752

2.5 Zea mays clone 1509994 membrane protein mRNA, complete cds NA coding protein psRNATarget
NM_001326691.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *|||||=|||||||||*||||
targets:732   AAGUACUCAAACAAAGACUAA   752

2.5 Zea mays membrane protein (LOC100381468), mRNA NA coding protein psRNATarget
AY110566.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  |||||*|||||||||||||*|
targets:339   GAGUAACCAAACAAAGCCUUA   359

2.5 Zea mays CL45690_1 mRNA sequence NA coding protein psRNATarget
LQ237989.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  ||*|||||||||*||||||||
targets:122   GAAUACCCAAACUAAGCCUAA   142

2.5 Sequence 3984 from Patent EP2985353 NA coding protein psRNATarget
JB166320.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  ||*|||||||||*||||||||
targets:122   GAAUACCCAAACUAAGCCUAA   142

2.5 Sequence 3984 from Patent EP2559767 NA coding protein psRNATarget
HI405859.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  ||*|||||||||*||||||||
targets:122   GAAUACCCAAACUAAGCCUAA   142

2.5 Sequence 3984 from Patent EP2074227 NA coding protein psRNATarget
XM_020546594.1
ncRNA:21   CUCAUGGGUUUGUUUCGGAUU   1
  *||||*||||||||||*||||
targets:1748   AAGUAGCCAAACAAAGACUAA   1768

2.5 PREDICTED: Zea mays uncharacterized LOC100502429 (LOC100502429), mRNA NA coding protein psRNATarget
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