Search result

BaseInfo

ncRNA ID	novel_zma_miR10951
Species	Zea mays
Class	miRNA
Genome position	Chr5:26077415-26077462 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	25 - AAGGAUCGAAUCGGAUUAGGGUCG - 48
Stem-loop(if miRNA)	--      C    C   U     U   AAGGAU GAAU GGA UAGGG C   |||||| |||| ||| ||||| G   UUUUUA CUUA UCU AUCCC G AG      -    U   U     G
Stem-loop sequence	AAGGAUCGAAUCGGAUUAGGGUCGGGCCCUAUUCUUAUUCAUUUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546275.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||||||||||||||||| targets:95   CGAUCCUAAUCCGAUUCGAUCCUU   118 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109943345), mRNA	NA	coding protein	psRNATarget
NM_001151316.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=||||||||||||||||=||| targets:1133   CGAUCCUAAUCCGAUUCGAUUCUU   1156 Target Full Sequence	1.5	Zea mays protein FAM133-like (LOC103633327), mRNA	NA	coding protein	psRNATarget
EU970845.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=||||||||||||||||=||| targets:1133   CGAUCCUAAUCCGAUUCGAUUCUU   1156 Target Full Sequence	1.5	Zea mays clone 352131 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ075083.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   =||=||||||||||||=||||||| targets:13   UGAUCCUAAUCCGAUUUGAUCCUU   36 Target Full Sequence	1.5	TSA: Zea mays contig10720, mRNA sequence	NA	coding protein	psRNATarget
EU957403.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||||*|||||||||||| targets:766   CGAUCCUAAUCAGAUUCGAUCCUU   789 Target Full Sequence	1.5	Zea mays clone 1591018 glycine-rich protein A3 mRNA, complete cds	NA	coding protein	psRNATarget
EU974083.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=||||||||||||*||||||| targets:799   CGAUCCUAAUCCGAUUAGAUCCUU   822 Target Full Sequence	1.5	Zea mays clone 439310 mRNA sequence	NA	coding protein	psRNATarget
BT041027.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||||*|||||||||||| targets:968   CGAUCCUAAUCAGAUUCGAUCCUU   991 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0168E18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147835.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||||*|||||||||||| targets:968   CGAUCCUAAUCAGAUUCGAUCCUU   991 Target Full Sequence	1.5	Zea mays glycine/proline-rich family protein (LOC100273398), mRNA	NA	coding protein	psRNATarget
BT085725.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||||*|||||||||||| targets:1059   CGAUCCUAAUCAGAUUCGAUCCUU   1082 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0052A15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538840.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||||*|||||||||||| targets:1641   CGAUCCUAAUCAGAUUCGAUCCUU   1664 Target Full Sequence	1.5	PREDICTED: Zea mays glycine/proline-rich family protein (LOC100273398), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957155.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||*|||||||||||||| targets:1358   CGAUCCUAACCCGAUUCGAUCCUU   1381 Target Full Sequence	1.0	Zea mays clone 1584207 mRNA sequence	NA	coding protein	psRNATarget
XM_008673990.2	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||*|||||||||||||| targets:612   CGAUCCUAACCCGAUUCGAUCCUU   635 Target Full Sequence	1.0	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067926.2	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=||||=|||||||||||*||| targets:729   CGAUCCUAGUCCGAUUCGAUACUU   752 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0015B22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662033.2	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   =||=|||||||||||||*|||||| targets:1111   UGAUCCUAAUCCGAUUCAAUCCUU   1134 Target Full Sequence	1.5	PREDICTED: Zea mays LOB domain-containing protein 1 (LOC103639277), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667658.2	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   =||=|||||*|||||||||||||| targets:1357   UGAUCCUAACCCGAUUCGAUCCUU   1380 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100217218 (pco088212), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008667637.2	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   =||=|||||*|||||||||||||| targets:1650   UGAUCCUAACCCGAUUCGAUCCUU   1673 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100217218 (pco088212), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549851.1	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   |||=|||||*|||*|||||||||| targets:514   CGAUCCUAACCCGCUUCGAUCCUU   537 Target Full Sequence	2.5	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100382270), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT084667.2	ncRNA:24   GCUGGGAUUAGGCUAAGCUAGGAA   1   =|==|||||**||||||||||||| targets:1199   UGGUCCUAACGCGAUUCGAUCCUU   1222 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0154O23 mRNA, complete cds	NA	coding protein	psRNATarget