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BaseInfo

ncRNA ID	novel_zma_miR10945
Species	Zea mays
Class	miRNA
Genome position	Chr5:38124977-38125032 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - ACACUCGGCAAAGAACCAAUACCU - 24
Stem-loop(if miRNA)	--   C    C      C A     UGG   ACA UCGG AAAGAA C AUACC   G   ||| |||| |||||| | |||||   UGU AGCC UUUCUU G UAUGG   C GU   A    A      C A     UCA
Stem-loop sequence	ACACUCGGCAAAGAACCAAUACCUGGGCACUGGUAUAGCUUCUUUACCGAAUGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238815.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   *|||||*||||||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	1.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   *|||||*||||||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	1.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   *|||||*||||||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	1.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||* targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	1.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||* targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	1.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||* targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	1.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   *|||||*||||||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	1.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   *|||||*||||||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	1.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   *|||||*||||||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	1.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACA   1   =*||=||||-||||||||||||||* targets:44   GAGUGUUGGCUUCUUUGCCGAGUGC   68 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACA   1   =*||=||||-||||||||||||||* targets:1143   GAGUGUUGGCUUCUUUGCCGAGUGC   1167 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACA   1   =*||=||||-||||||||||||||* targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UCCAUAACC-AAGAAACGGCUCACA   1   =*||=||||-||||||||||||||* targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UCCAUAAC-CAAGAAACGGCUCACA   1   *||*||*|-|||||||||||||||| targets:498   CGGAAUCGCGUUCUUUGCCGAGUGU   522 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UCCAUAACCAAGAAACGGCUCACA   1   =|**|**||||||||||||||||| targets:584   GGCAAAGGGUUCUUUGCCGAGUGU   607 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
NM_001138164.1	ncRNA:24   UCCAUAA-CCAAGAAACGGCUCACA   1   *||*|||-||*|||||||||||||| targets:1289   CGGAAUUCGGCUCUUUGCCGAGUGU   1313 Target Full Sequence	3.0	Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA	NA	coding protein	psRNATarget
BT035133.1	ncRNA:24   UCCAUAA-CCAAGAAACGGCUCACA   1   *||*|||-||*|||||||||||||| targets:1289   CGGAAUUCGGCUCUUUGCCGAGUGU   1313 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668897.2	ncRNA:24   UCCAUAA-CCAAGAAACGGCUCACA   1   *||*|||-||*|||||||||||||| targets:1237   CGGAAUUCGGCUCUUUGCCGAGUGU   1261 Target Full Sequence	3.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547384.1	ncRNA:24   UCCAUAA-CCAAGAAACGGCUCACA   1   *||*|||-||*|||||||||||||| targets:1250   CGGAAUUCGGCUCUUUGCCGAGUGU   1274 Target Full Sequence	3.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UCCAUAAC-CAAGAAACGGCUCACA   1   *||*||*|-|||||||||||||||| targets:798   CGGAAUCGUGUUCUUUGCCGAGUGU   822 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCCAUAAC-CAAGAAACGGCUCACA   1   *||*||*|-|||||||||||||||| targets:798   CGGAAUCGUGUUCUUUGCCGAGUGU   822 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:20   UAA-CCAAGAAACGGCUCACA   1   *||-||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	2.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:20   UAA-CCAAGAAACGGCUCACA   1   *||-||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	2.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB169026.1	ncRNA:20   UAA-CCAAGAAACGGCUCACA   1   *||-||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	2.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget