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BaseInfo

ncRNA ID novel_zma_miR10920
Species Zea mays
Class miRNA
Genome position Chr5:164788456-164788539 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 64 - UCUGUCCAGAUUGUAUAAUUC - 84
Stem-loop(if miRNA) --UC    C                          U   CAA
    UGUC AGAUUGUAUAAUUCAACAAAUUUUGA CUA   A
    |||| |||||||||||||||||||||||||| |||
    AUAG UCUAAUAUAUUAGGUUGUUUAAAACU GAU   U
UUAU    A                          U   UAU
Stem-loop sequence UCUGUCCAGAUUGUAUAAUUCAACAAAUUUUGAUCUACAAAUUAUUAGUUCAAAAUUUGUUGGAUUAUAUAAUCUAGAUAUAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008682894.2
ncRNA:21   CUUAAUAUGUUAGACCUGUCU   1
  |=||||||=||||||||||||
targets:5045   GGAUUAUAUAAUCUGGACAGA   5065

1.5 PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008681303.2
ncRNA:21   CUUAAUAUGUUAGACCUGUCU   1
  *=|||=||=||||||||||||
targets:2327   AGAUUGUAUAAUCUGGACAGA   2347

2.5 PREDICTED: Zea mays F-box protein At-B (LOC103654475), mRNA NA coding protein psRNATarget
EU977031.1
ncRNA:21   CUUAAUAUGUUAGACCUGUCU   1
  *=|||=||=||||||||||||
targets:670   AGAUUGUAUAAUCUGGACAGA   690

2.5 Zea mays clone 996758 mRNA sequence NA coding protein psRNATarget