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BaseInfo

ncRNA ID novel_zma_miR10902
Species Zea mays
Class miRNA
Genome position Chr5:217336163-217336243 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 61 - UUUGGAUUGAAUUGGUUGGUG - 81
Stem-loop(if miRNA) --                     -CAUGCAACUUA    AU
  UUUGGAUUGAAUUGGUUGGUG            GUAA  C
  |||||||||||||||||||||            ||||
  AAAUUUAACUUAACCAAUCAC            UAUU  C
GA                     AACAAUUUCACA    CA
Stem-loop sequence UUUGGAUUGAAUUGGUUGGUGCAUGCAACUUAGUAAAUCCACUUAUACACUUUAACAACACUAACCAAUUCAAUUUAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008678423.2
ncRNA:21   GUGGUUGGUUAAGUUAGGUUU   1
  |||=|||||||||||*|||||
targets:536   CACUAACCAAUUCAACCCAAA   556

2.5 PREDICTED: Zea mays putative protein kinase superfamily protein (LOC100194403), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678423.2
ncRNA:21   GUGGUUGGUUAAGUUAGGUUU   1
  |||=|||||||||||*|||||
targets:615   CACUAACCAAUUCAACCCAAA   635

2.5 PREDICTED: Zea mays putative protein kinase superfamily protein (LOC100194403), transcript variant X1, mRNA NA coding protein psRNATarget
EZ107374.1
ncRNA:21   GUGGUUGGUUAAGUUAGGUUU   1
  =*|||||*|||||||||=|||
targets:115   UCCCAACAAAUUCAAUCUAAA   135

2.5 TSA: Zea mays contig43032, mRNA sequence NA coding protein psRNATarget