Search result

BaseInfo

ncRNA ID	novel_zma_miR10886
Species	Zea mays
Class	miRNA
Genome position	Chr5:16269483-16269582 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	1 - CAAAUUAUAAGUUGUCCUGGC - 21
Stem-loop(if miRNA)	--               CC         G    UAG     AUAAAU   GG   CAAAUUAUAAGUUGU  UGGCUUUUC AGAU   ACAGC      CUA  U   |||||||||||||||  ||||||||| ||||   |||||      |||   GUUUAAUAUUCAACA  ACCGAAAAG UCUG   UGUCG      GGU  G AG               AC         A    ---     -AAAAC   AC
Stem-loop sequence	CAAAUUAUAAGUUGUCCUGGCUUUUCGAGAUUAGACAGCAUAAAUCUAGGUGCAUGGCAAAAGCUGUGUCUAGAAAAGCCACAACAACUUAUAAUUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY105968.1	ncRNA:21   CGGUCCUGUUGAAUAUUAAAC   1   **|||*||||||||||||||| targets:958   AACAGAACAACUUAUAAUUUG   978 Target Full Sequence	1.0	Zea mays PCO073110 mRNA sequence	NA	coding protein	psRNATarget
BT068023.1	ncRNA:21   CGGUCCUGUUGAAUAUUAAAC   1   **|||*||||||||||||||| targets:965   AACAGAACAACUUAUAAUUUG   985 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0034P11 mRNA, complete cds	NA	coding protein	psRNATarget
EU959234.1	ncRNA:21   CGGUCCUGUUGAAUAUUAAAC   1   **|||*||||||||||||||| targets:940   AACAGAACAACUUAUAAUUUG   960 Target Full Sequence	1.0	Zea mays clone 212731 ER-derived vesicles protein ERV14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154931.1	ncRNA:21   CGGUCCUGUUGAAUAUUAAAC   1   **|||*||||||||||||||| targets:940   AACAGAACAACUUAUAAUUUG   960 Target Full Sequence	1.0	Zea mays uncharacterized LOC100282018 (umc2196), mRNA	NA	coding protein	psRNATarget
BT018603.1	ncRNA:21   CGGUCCUGUUGAAUAUUAAAC   1   **=|*|=|||||||||||||| targets:405   CAUAUGGCAACUUAUAAUUUG   425 Target Full Sequence	3.0	Zea mays clone EL01N0449F05.d mRNA sequence	NA	coding protein	psRNATarget