Search result

BaseInfo

ncRNA ID	novel_zma_miR10855
Species	Zea mays
Class	miRNA
Genome position	Chr4:61663294-61663504 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	191 - UACAUAUGAUAUCGUGACAUG - 211
Stem-loop(if miRNA)	--                      A               G                                    GA      AG   C   C  A      CA   UGUCAUGAUAUCAUAUGUAGAG CUGUGAUAAAAAUUU AGAAUGUUUCGAGAAAGUUGUGACACACUAUGUGUA  AACCUA  UGG CUA AU UGAAAU  U   |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||  ||| ||| || ||||||   ACAGUGCUAUAGUAUACAUCUC GACACUAUUUUUAAA UCUUACAAAGCUCUUUCAACACUGUGUGAUACACAU  UUGGAU  GCC GAU UA AUUUUG  A GU                      C               A                                    AA      CG   A   A  -      AG
Stem-loop sequence	UGUCAUGAUAUCAUAUGUAGAGACUGUGAUAAAAAUUUGAGAAUGUUUCGAGAAAGUUGUGACACACUAUGUGUAGAAACCUAAGUGGCCUACAUAUGAAAUCAUAGAGUUUUAAUAUAGACCGGCUAGGUUAAUACACAUAGUGUGUCACAACUUUCUCGAAACAUUCUAAAAUUUUUAUCACAGCCUCUACAUAUGAUAUCGUGACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163683.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||||| targets:15   CGUGUCAUGAUAUCAUAUGUA   35 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
JB163681.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||||| targets:15   CGUGUCAUGAUAUCAUAUGUA   35 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||||| targets:15   CGUGUCAUGAUAUCAUAUGUA   35 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||||| targets:15   CGUGUCAUGAUAUCAUAUGUA   35 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||||| targets:15   CGUGUCAUGAUAUCAUAUGUA   35 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
HI403220.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||||| targets:15   CGUGUCAUGAUAUCAUAUGUA   35 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551149.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   *||||||=|=||||||||||| targets:281   AAUGUCAUGGUAUCAUAUGUA   301 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109945307 (LOC109945307), mRNA	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||*|| targets:15   CGUGUCAUGAUAUCAUAUAUA   35 Target Full Sequence	2.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||*|| targets:15   CGUGUCAUGAUAUCAUAUAUA   35 Target Full Sequence	2.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   |=|||||=||||||||||*|| targets:15   CGUGUCAUGAUAUCAUAUAUA   35 Target Full Sequence	2.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
BT018432.1	ncRNA:21   GUACAGUGCUAUAGUAUACAU   1   *|**|||=||||||||||||| targets:1817   AAAAUCAUGAUAUCAUAUGUA   1837 Target Full Sequence	3.0	Zea mays clone EL01N0368B06.d mRNA sequence	NA	coding protein	psRNATarget