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BaseInfo

ncRNA ID	novel_zma_miR10850
Species	Zea mays
Class	miRNA
Genome position	Chr4:46665979-46666145 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	25
Mature sequence(if miRNA)	1 - AAGAAAAAACACUCGGCAAAGAGCU - 25
Stem-loop(if miRNA)	A            A    -                 G     G   C             -CC              AA AAGA AAAACACUCGGC AAGA GCUCUUUGCCGAGUGUU UAUUU UGA ACUCGGCAAAGAG   CUUUGCCGAGUGUC  A |||| |||||||||||| |||| ||||||||||||||||| ||||| ||| |||||||||||||   ||||||||||||||  A UUUU UUUUGUGAGCCG UUCU CGAGAAACGGCUCACAA AUAAA ACU UGAGCUGUUUCUC   GAAACGGCUCACAG  A     C            C    U                 A     A   A             AAA              AA
Stem-loop sequence	AAGAAAAAACACUCGGCAAAGAGCUCUUUGCCGAGUGUUGUAUUUGUGACACUCGGCAAAGAGCCCUUUGCCGAGUGUCAAAAAAAGACACUCGGCAAAGAAACUCUUUGUCGAGUAUCAAAAAUAAAACACUCGGCAAAGAGCUUCUUCGCCGAGUGUUUUCUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167154.1	ncRNA:25   UCGAGAAACGGCUCACAAAAAAGAA   1   ||||||||||||||||||||||=|* targets:106   AGCUCUUUGCCGAGUGUUUUUUUUC   130 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:25   UCGAGAAACGGCUCACAAAAAAGAA   1   ||||||||||||||||||||||=|* targets:106   AGCUCUUUGCCGAGUGUUUUUUUUC   130 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:25   UCGAGAAACGGCUCACAAAAAAGAA   1   ||||||||||||||||||||||=|* targets:106   AGCUCUUUGCCGAGUGUUUUUUUUC   130 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:25   UCGAGAAACGGCUCACAAAAAAGAA   1   |*|*|||*||||||||||||||*|| targets:4391   AACCCUUGGCCGAGUGUUUUUUGUU   4415 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:25   UCGAGAAACGGCUCACAAAAAAGAA   1   |*|*|||*||||||||||||||*|| targets:4398   AACCCUUGGCCGAGUGUUUUUUGUU   4422 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:25   UCGAGAAACGGCUCACAAAAAAGAA   1   |*|*|||*||||||||||||||*|| targets:4459   AACCCUUGGCCGAGUGUUUUUUGUU   4483 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget