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BaseInfo

ncRNA ID	novel_zma_miR10842
Species	Zea mays
Class	miRNA
Genome position	Chr4:52572930-52573113 [-]
Reference genome	RefGen_v4
Source	SRR5100248;SRR5105961;SRR5105963
Length	24
Mature sequence(if miRNA)	1 - AAGAGAACUGCUGAUGGAAAUAGG - 24
Stem-loop(if miRNA)	--        C  C       A          C              U            A G          G       CCA   AA  UA   UAUUUCUA UA CGGUUCU UUAACACAAC GCCAGUAGAAAUCG CCAUUUUCACUG C GUUGGUGUAA GGAACCG   UAG  AU  G   |||||||| || ||||||| |||||||||| |||||||||||||| |||||||||||| | |||||||||| |||||||   |||  ||   AUAAAGGU GU GUCAAGA AAUUGUGUUG CGGUUAUUUUUAGC GGUAAAAGUGAC G CAAUCACAUU UCUUGGC   AUC  UA  A GG        A  C       G          A              U            C G          G       --A   AC  UU
Stem-loop sequence	UAUUUCUACUACCGGUUCUAUUAACACAACCGCCAGUAGAAAUCGUCCAUUUUCACUGACGGUUGGUGUAAGGGAACCGCCAUAGAAAUUAGAUUAUCACUAACGGUUCUGUUACACUAACGGCCAGUGAAAAUGGUCGAUUUUUAUUGGCAGUUGUGUUAAGAGAACUGCUGAUGGAAAUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065070.1	ncRNA:24   GGAUAAAGGUAGUCGUCAAGAGAA   1   ||||||**|*|||||||||||||| targets:743   CCUAUUGGCUUCAGCAGUUCUCUU   766 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0033C10 mRNA, complete cds	NA	coding protein	psRNATarget
EU943055.1	ncRNA:24   GGAUAAAGGUAGUCGUCAAGAGAA   1   ||||||**|*|||||||||||||| targets:396   CCUAUUGGCUUCAGCAGUUCUCUU   419 Target Full Sequence	3.0	Zea mays clone 1557258 mRNA sequence	NA	coding protein	psRNATarget
NM_001175419.2	ncRNA:24   GGAUAAAGGUAGUCGUCAAGAGAA   1   ||||||**|*|||||||||||||| targets:743   CCUAUUGGCUUCAGCAGUUCUCUU   766 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382695 (LOC100382695), mRNA	NA	coding protein	psRNATarget
XM_020538229.1	ncRNA:24   GGAUAAAGGUAGUCGUCAAGAGAA   1   ||||||**|*|||||||||||||| targets:757   CCUAUUGGCUUCAGCAGUUCUCUU   780 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100382695 (LOC100382695), transcript variant X1, mRNA	NA	coding protein	psRNATarget