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BaseInfo

ncRNA ID	novel_zma_miR10840
Species	Zea mays
Class	miRNA
Genome position	Chr4:41455820-41455885 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	1 - UUGCGUCUGGAUCGAAGGAGA - 21
Stem-loop(if miRNA)	--            C           AU AUUU   UUGCGUCUGGAU GAAGGAGAUUG  G    A   |||||||||||| |||||||||||  |   AACGCAGACUUA CUUCCUCUAAC  C    A CU            A           CU CCCU
Stem-loop sequence	UUGCGUCUGGAUCGAAGGAGAUUGAUGAUUUAAUCCCCUCCAAUCUCCUUCAAUUCAGACGCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY110278.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   *||=|||=||||||||||||| targets:189   CCUUCUUUGAUCCAGACGCAA   209 Target Full Sequence	2.0	Zea mays CL14707_1 mRNA sequence	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*|||||||||||||||=|| targets:101   UCCCCUUCGAUCCAGACGUAA   121 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*|||||||||||||||=|| targets:101   UCCCCUUCGAUCCAGACGUAA   121 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*|||||||||||||||=|| targets:101   UCCCCUUCGAUCCAGACGUAA   121 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*|||||||||||||||=|| targets:101   UCCCCUUCGAUCCAGACGUAA   121 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*|||||||||||||||=|| targets:101   UCCCCUUCGAUCCAGACGUAA   121 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*|||||||||||||||=|| targets:101   UCCCCUUCGAUCCAGACGUAA   121 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
EU946897.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*=||||||||||||||||| targets:307   UCCUCUUCGAUCCAGACGCAA   327 Target Full Sequence	2.0	Zea mays clone 324711 mRNA sequence	NA	coding protein	psRNATarget
BT085111.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   ||*||||||||||||=||||| targets:1415   UCCCCUUCGAUCCAGGCGCAA   1435 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543715.1	ncRNA:21   AGAGGAAGCUAGGUCUGCGUU   1   |||=||*=||||||||||||| targets:1617   UCUUCUCUGAUCCAGACGCAA   1637 Target Full Sequence	3.0	PREDICTED: Zea mays myosin heavy chain-related (cl7835_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget