Search result

BaseInfo

ncRNA ID	osa-miRf10681-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - CCUGUCGAACAGGGGCAGUUCGAC - NA
Stem-loop(if miRNA)	GGAUA           A   -         C  CCC              -----GG  --  --   GACAGGUCCUGUCGAA      UCCUGUCGAAC GGG GCAGUUCGA AG   UGCCUGUCGAACGG       GC  UG  UUC                C      ||||||||||| ||| ||||||||| ||   ||||||||||||||       ||  ||  |||                G      GGGACAGCUUG CCC CGUCAAGCU UC   GCGGAUAGCUUGCC       CG  GA  GCU                G --CCA           -   A         A  -CC              AGUCUCG  CU  CC   CCUCUAGCCUUCCGAC
Stem-loop sequence	GGAUAUCCUGUCGAACAGGGGCAGUUCGACAGCCCUGCCUGUCGAACGGGGGCUGUUCGACAGGUCCUGUCGAACGGCAGCCUUCCGAUCUCCUCGCCAGUCGCGCUCUGACCGUUCGAUAGGCGCCCUAUCGAACUGCACCCGUUCGACAGGGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065695.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||||||||||||||||||||||| targets:1077   GUCGAACUGCCCCUGUUCGACAGG   1100 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013037P18, full insert sequence	NA	coding protein	psRNATarget
AK065695.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||*|||||||||||||||||||| targets:1107   GUCAAACUGCCCCUGUUCGACAGG   1130 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013037P18, full insert sequence	NA	coding protein	psRNATarget
AK065695.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||||||*|||||*|||||||||| targets:1046   GUCGAACAGCCCCCGUUCGACAGG   1069 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013037P18, full insert sequence	NA	coding protein	psRNATarget
XM_015762225.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||||||||||||*|||||||||| targets:327   GUCGAACUGCCCCAGUUCGACAGG   350 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350222 (LOC4350222), transcript variant X2, mRNA	uncharacterized LOC4350222(LOC4350222)	coding protein	psRNATarget
XM_015762225.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||||||||||||*|||||||||| targets:581   GUCGAACUGCCCCAGUUCGACAGG   604 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350222 (LOC4350222), transcript variant X2, mRNA	uncharacterized LOC4350222(LOC4350222)	coding protein	psRNATarget
XM_015762225.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   *||*|||||||||*|||||||||| targets:612   AUCAAACUGCCCCAGUUCGACAGG   635 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350222 (LOC4350222), transcript variant X2, mRNA	uncharacterized LOC4350222(LOC4350222)	coding protein	psRNATarget
XM_015762224.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||||||||||||*|||||||||| targets:584   GUCGAACUGCCCCAGUUCGACAGG   607 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350222 (LOC4350222), transcript variant X1, mRNA	uncharacterized LOC4350222(LOC4350222)	coding protein	psRNATarget
XM_015762224.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   |||||||||||||*|||||||||| targets:838   GUCGAACUGCCCCAGUUCGACAGG   861 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350222 (LOC4350222), transcript variant X1, mRNA	uncharacterized LOC4350222(LOC4350222)	coding protein	psRNATarget
XM_015762224.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   *||*|||||||||*|||||||||| targets:869   AUCAAACUGCCCCAGUUCGACAGG   892 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350222 (LOC4350222), transcript variant X1, mRNA	uncharacterized LOC4350222(LOC4350222)	coding protein	psRNATarget
XM_015758519.1	ncRNA:24   CAGCUUGACGGGGACAAGCUGUCC   1   ***||*||||||||||||||||*| targets:265   CAGGACCUGCCCCUGUUCGACACG   288 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group aspartic proteinase nepenthesin-1-like (LOC107275802), mRNA	aspartic proteinase nepenthesin-1-like(LOC107275802)	coding protein	psRNATarget