Search result

BaseInfo

ncRNA ID novel_zma_miR10836
Species Zea mays
Class miRNA
Genome position Chr10:41718480-41718554 [-]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 24
Mature sequence(if miRNA) 52 - AAACUGUAACGCCCUGAAUUUGGG - 75
Stem-loop(if miRNA) --AAACU        C         -   U    UUUUG
       GUAACGCC UGAAUUUGG GGG AGAA     U
       |||||||| ||||||||| ||| ||||
       CAUUGCGG ACUUAAACC CUC UCUU     C
CCUUUCC        -         A   -    UUCUU
Stem-loop sequence AAACUGUAACGCCCUGAAUUUGGGGGUAGAAUUUUGUCUUCUUUUCUCUCACCAAAUUCAGGCGUUACCCUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539096.1
ncRNA:24   GGGUUUAAGUCCCGCAAUGUCAAA   1
  |**|=|||||*||||||||||*||
targets:788   CAGAGAUUCAUGGCGUUACAGAUU   811

2.5 PREDICTED: Zea mays AP3-complex subunit beta-A (LOC100383432), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001351147.1
ncRNA:24   GGGUUUAAGUCCCGCAAUGUCAAA   1
  |**|=|||||*||||||||||*||
targets:966   CAGAGAUUCAUGGCGUUACAGAUU   989

2.5 Zea mays AP3-complex subunit beta-A (LOC100383432), mRNA NA coding protein psRNATarget