Search result

BaseInfo

ncRNA ID	osa-miRf10680-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UAUCAGCUAGCUAGCUGGCUUAU - NA
Stem-loop(if miRNA)	C                  CU   UGCAACCC CAAU AGUUAGCUAGCUAGCUGG  UAU        A |||| ||||||||||||||||||  |||        C GUUA UCGGUCGAUCGAUCGACU  AUA        C     U                  AU   UAUCCUAC
Stem-loop sequence	CAAUCAGUUAGCUAGCUAGCUGGCUUAUUGCAACCCACCCAUCCUAUAUAUAUCAGCUAGCUAGCUGGCUUAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755367.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |*||||=|||||||||||||||* targets:1771   AGAAGCUAGCUAGCUAGCUGAUU   1793 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative fatty acyl-CoA reductase 7 (LOC4347887), mRNA	putative fatty acyl-CoA reductase 7(LOC4347887)	coding protein	psRNATarget
AK071956.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |*||||=|||||||||||||||* targets:1772   AGAAGCUAGCUAGCUAGCUGAUU   1794 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013084H10, full insert sequence	NA	coding protein	psRNATarget
AK061142.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |*||||=|||||||||||||||* targets:1466   AGAAGCUAGCUAGCUAGCUGAUU   1488 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-208-C05, full insert sequence	NA	coding protein	psRNATarget
CT832215.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |*||||=|||||||||||||||* targets:3   AGAAGCUAGCUAGCUAGCUGAUU   25 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017P15, full insert sequence	NA	coding protein	psRNATarget
XM_015790756.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |||-||=|||||||||||||||* targets:177   AUA-GCUAGCUAGCUAGCUGAUU   198 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein TIFY 5 (LOC4342421), mRNA	protein TIFY 5(LOC4342421)	coding protein	psRNATarget
XM_015770373.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   ***|||=|||||||||||||||* targets:2734   CACAGCUAGCUAGCUAGCUGAUC   2756 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative GATA transcription factor 22 (LOC4328751), mRNA	putative GATA transcription factor 22(LOC4328751)	coding protein	psRNATarget
AK099607.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   ***|||=|||||||||||||||* targets:1094   CACAGCUAGCUAGCUAGCUGAUC   1116 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence	NA	coding protein	psRNATarget
XM_015755806.1	ncRNA:23   UAU----UCGGUCGAUCGAUCGACUAU   1   =||----|||=|*|||||||||||||| targets:11   GUACCACAGCUAUCUAGCUAGCUGAUA   37 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1-like (LOC107278880), mRNA	cinnamoyl-CoA reductase 1-like(LOC107278880)	coding protein	psRNATarget
XM_015762174.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   *|*|||=||||*||||||||||| targets:4564   UUUAGCUAGCUUGCUAGCUGAUA   4586 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4350156), transcript variant X3, mRNA	disease resistance protein RPP13(LOC4350156)	coding protein	psRNATarget
XM_015762172.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   *|*|||=||||*||||||||||| targets:1571   UUUAGCUAGCUUGCUAGCUGAUA   1593 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4350156), transcript variant X1, mRNA	disease resistance protein RPP13(LOC4350156)	coding protein	psRNATarget
XM_015762173.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   *|*|||=||||*||||||||||| targets:1530   UUUAGCUAGCUUGCUAGCUGAUA   1552 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4350156), transcript variant X2, mRNA	disease resistance protein RPP13(LOC4350156)	coding protein	psRNATarget
AK242208.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |*||||*|*|||||||||||||| targets:99   AGAAGCAAACUAGCUAGCUGAUA   121 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075170B05, full insert sequence	NA	coding protein	psRNATarget
XM_015755844.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |**|||=|||||||||||||*|| targets:521   AGUAGCUAGCUAGCUAGCUGCUA   543 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346439 (LOC4346439), mRNA	uncharacterized LOC4346439(LOC4346439)	coding protein	psRNATarget
AK107885.1	ncRNA:23   UAUUCGGUCGAUCGAUCGACUAU   1   |**|||=|||||||||||||*|| targets:427   AGUAGCUAGCUAGCUAGCUGCUA   449 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-134-D11, full insert sequence	NA	coding protein	psRNATarget