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BaseInfo

ncRNA ID	ath-miRf10116-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - AGUGGCUGCAGCUGCAGCGACU - NA
Stem-loop(if miRNA)	-  C         C        CA  A GCAC AG UGCUGUAGC GCAGCCAC  UU C |||| || ||||||||| ||||||||  || A UGUG UC GCGACGUCG CGUCGGUG  AG G     A  A         A        AA  G
Stem-loop sequence	GCACAGCUGCUGUAGCCGCAGCCACCAUUACAGGGAAAGUGGCUGCAGCUGCAGCGACUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX830526.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1139   AGCCGCUGCAGCUGCAGCCUCU   1160 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB89ZA01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT015916.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1068   AGCCGCUGCAGCUGCAGCCUCU   1089 Target Full Sequence	1.5	Arabidopsis thaliana At5g04420 gene, complete cds	NA	coding protein	psRNATarget
BT022006.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1100   AGCCGCUGCAGCUGCAGCCUCU   1121 Target Full Sequence	1.5	Arabidopsis thaliana At5g04420 gene, complete cds	NA	coding protein	psRNATarget
AF412043.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1182   AGCCGCUGCAGCUGCAGCCUCU   1203 Target Full Sequence	1.5	Arabidopsis thaliana AT5g04420/T32M21_20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001036755.2	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1184   AGCCGCUGCAGCUGCAGCCUCU   1205 Target Full Sequence	1.5	Arabidopsis thaliana Galactose oxidase/kelch repeat superfamily protein mRNA	Galactose oxidase/kelch repeat superfamily protein(AT5G04420)	coding protein	psRNATarget
NM_120524.3	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1285   AGCCGCUGCAGCUGCAGCCUCU   1306 Target Full Sequence	1.5	Arabidopsis thaliana Galactose oxidase/kelch repeat superfamily protein mRNA	Galactose oxidase/kelch repeat superfamily protein(AT5G04420)	coding protein	psRNATarget
AK317314.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1453   AGCCGCUGCAGCUGCAGCCUCU   1474 Target Full Sequence	1.5	Arabidopsis thaliana AT5G04420 mRNA, complete cds, clone: RAFL22-12-E20	NA	coding protein	psRNATarget
NM_001036756.2	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||*||||||||||||||||*|| targets:1452   AGCCGCUGCAGCUGCAGCCUCU   1473 Target Full Sequence	1.5	Arabidopsis thaliana Galactose oxidase/kelch repeat superfamily protein mRNA	Galactose oxidase/kelch repeat superfamily protein(AT5G04420)	coding protein	psRNATarget
BX830819.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   =**||||||||||||||||*|| targets:1208   GCCCGCUGCAGCUGCAGCCUCU   1229 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS27ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX815968.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   =|*|||*||||||||||||||* targets:165   GGCCGCCGCAGCUGCAGCCACC   186 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT003717.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |||*||||||||||||||*||| targets:447   AGUGGCUGCAGCUGCAGCGACU   468 Target Full Sequence	2.5	Arabidopsis thaliana At3g01210 mRNA, complete cds	NA	coding protein	psRNATarget
AK118577.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |||*||||||||||||||*||| targets:509   AGUGGCUGCAGCUGCAGCGACU   530 Target Full Sequence	2.5	Arabidopsis thaliana At3g01210 mRNA for unknown protein, complete cds, clone: RAFL19-81-B01	NA	coding protein	psRNATarget
NM_001337328.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |||*||||||||||||||*||| targets:678   AGUGGCUGCAGCUGCAGCGACU   699 Target Full Sequence	2.5	Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein mRNA	RNA-binding (RRM/RBD/RNP motifs) family protein(AT3G01210)	coding protein	psRNATarget
NM_110987.4	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |||*||||||||||||||*||| targets:912   AGUGGCUGCAGCUGCAGCGACU   933 Target Full Sequence	2.5	Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein mRNA	RNA-binding (RRM/RBD/RNP motifs) family protein(AT3G01210)	coding protein	psRNATarget
NM_101258.2	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:256   UGCAGCUGCAGUUGCAGCCACU   277 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein partial mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
NM_001332100.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:317   UGCAGCUGCAGUUGCAGCCACU   338 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein partial mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
NM_001332099.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:317   UGCAGCUGCAGUUGCAGCCACU   338 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
NM_001332098.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:317   UGCAGCUGCAGUUGCAGCCACU   338 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
NM_001332103.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:231   UGCAGCUGCAGUUGCAGCCACU   252 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
NM_001332102.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:235   UGCAGCUGCAGUUGCAGCCACU   256 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
NM_001332101.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|**|||||||=|||||||||| targets:235   UGCAGCUGCAGUUGCAGCCACU   256 Target Full Sequence	2.5	Arabidopsis thaliana Remorin family protein mRNA	Remorin family protein(AT1G13920)	coding protein	psRNATarget
BT000195.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |*|||||||||||||*|||||* targets:156   ACUCGCUGCAGCUGCUGCCACG   177 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At3g26910) mRNA, complete cds	NA	coding protein	psRNATarget
AY136351.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |*|||||||||||||*|||||* targets:254   ACUCGCUGCAGCUGCUGCCACG   275 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At3g26910) mRNA, complete cds	NA	coding protein	psRNATarget
AK316927.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |*|||||||||||||*|||||* targets:415   ACUCGCUGCAGCUGCUGCCACG   436 Target Full Sequence	2.5	Arabidopsis thaliana AT3G26910 mRNA, complete cds, clone: RAFL16-37-O07	NA	coding protein	psRNATarget
NM_001035701.2	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |*|||||||||||||*|||||* targets:455   ACUCGCUGCAGCUGCUGCCACG   476 Target Full Sequence	2.5	Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein mRNA	hydroxyproline-rich glycoprotein family protein(AT3G26910)	coding protein	psRNATarget
NM_113603.5	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |*|||||||||||||*|||||* targets:455   ACUCGCUGCAGCUGCUGCCACG   476 Target Full Sequence	2.5	Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein mRNA	hydroxyproline-rich glycoprotein family protein(AT3G26910)	coding protein	psRNATarget
NM_001338839.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   |*|||||||||||||*|||||* targets:455   ACUCGCUGCAGCUGCUGCCACG   476 Target Full Sequence	2.5	Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein mRNA	hydroxyproline-rich glycoprotein family protein(AT3G26910)	coding protein	psRNATarget
AK221627.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   ||-|*|||||||||||||=||| targets:816   AG-CUCUGCAGCUGCAGCUACU   836 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-M20	NA	coding protein	psRNATarget
BT025754.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|*|||*||||||||||||=|| targets:363   CGCCGCCGCAGCUGCAGCCGCU   384 Target Full Sequence	2.5	Arabidopsis thaliana At2g35700 mRNA, complete cds	NA	coding protein	psRNATarget
DQ446600.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|*|||*||||||||||||=|| targets:363   CGCCGCCGCAGCUGCAGCCGCU   384 Target Full Sequence	2.5	Arabidopsis thaliana clone pENTR221-At2g35700 AP2 domain-containing transcription factor (At2g35700) mRNA, complete cds	NA	coding protein	psRNATarget
AY560845.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|*|||*||||||||||||=|| targets:363   CGCCGCCGCAGCUGCAGCCGCU   384 Target Full Sequence	2.5	Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds	NA	coding protein	psRNATarget
DQ653042.1	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|*|||*||||||||||||=|| targets:363   CGCCGCCGCAGCUGCAGCCGCU   384 Target Full Sequence	2.5	Arabidopsis thaliana clone 0000016552_0000011552 unknown mRNA	NA	coding protein	psRNATarget
NM_129125.2	ncRNA:22   UCAGCGACGUCGACGUCGGUGA   1   *|*|||*||||||||||||=|| targets:504   CGCCGCCGCAGCUGCAGCCGCU   525 Target Full Sequence	2.5	Arabidopsis thaliana ERF family protein 38 (ERF38), mRNA	ERF family protein 38(ERF38)	coding protein	psRNATarget