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BaseInfo

ncRNA ID novel_zma_miR10813
Species Zea mays
Class miRNA
Genome position Chr4:215042589-215042779 [-]
Reference genome RefGen_v4
Source SRR5100248
Length 23
Mature sequence(if miRNA) 1 - UUCCACUGGCGGCUGUAUUAAGC - 23
Stem-loop(if miRNA) ----UU      G       A            C   A C          U         UAU                          UUAUUA   A
      UGCAGC GCUAGUG AAAUAGCAUUUC ACU G GGCUGUAUUA GUAAACCGC   UGGAAAUAACAUUUCCAUUGGCGGCU      AGC A
      |||||| ||||||| |||||||||||| ||| | |||||||||| |||||||||   ||||||||||||||||||||||||||      ||| A
      AUGUCG CGGUCAC UUUAUUGUAAAG UGA C CCGACAUAAU CGUUUGGUG   ACCUUUAUUGUAAAGGUAACCGCCGA      UCG A
CGAAUU      G       C            A   C U          U         UUC                          ------   C
Stem-loop sequence UUUGCAGCGGCUAGUGAAAAUAGCAUUUCCACUAGCGGCUGUAUUAUGUAAACCGCUAUUGGAAAUAACAUUUCCAUUGGCGGCUUUAUUAAGCAAAACGCUAGCCGCCAAUGGAAAUGUUAUUUCCACUUGUGGUUUGCUUAAUACAGCCUCCAGUAGAAAUGUUAUUUCCACUGGCGGCUGUAUUAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950653.1
ncRNA:23   CGAAUUAUGUCGGCGGUCACCUU   1
  |=||*||*=||||||||||||||
targets:72   GUUUUAUUUAGCCGCCAGUGGAA   94

3.0 Zea mays clone 506422 mRNA sequence NA coding protein psRNATarget