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BaseInfo

ncRNA ID	novel_zma_miR10801
Species	Zea mays
Class	miRNA
Genome position	Chr4:216313189-216313303 [+]
Reference genome	RefGen_v4
Source	SRR5100248;SRR2089703
Length	22
Mature sequence(if miRNA)	94 - AGUGGAAUAAAAUAGAGGGACU - 115
Stem-loop(if miRNA)	--        A                 AC       UG              A      UCCCUCUA UUUAUUCCACUUUAGUC  UAAAUUG  AAAUAUGGAAACUA AAUA   |||||||| |||||||||||||||||  |||||||  |||||||||||||| |||G   AGGGAGAU AAAUAAGGUGAAAUCAG  AUUUAAC  UUUAUACCUUUGAU UUGA UC        A                 AU       GU              A
Stem-loop sequence	UCCCUCUAAUUUAUUCCACUUUAGUCACUAAAUUGUGAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUGGAAUAAAAUAGAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647122.2	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*||||||||||||| targets:2989   AGUCCCUCCAUUUUAUUCCACU   3010 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*||||||||||||| targets:2600   AGUCCCUCCAUUUUAUUCCACU   2621 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*||||||||||||| targets:482   AGUCCCUCCAUUUUAUUCCACU   503 Target Full Sequence	1.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:294   AGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:169   AGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:169   AGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:169   AGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:78   AGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:78   AGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|||||||||||=| targets:78   AGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   |||||||**||||||||||||| targets:1917   AGUCCCUACAUUUUAUUCCACU   1938 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|*||||||||||| targets:1659   AGUCCCUCCAAUUUAUUCCACU   1680 Target Full Sequence	2.5	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   ||||||||*|*||||||||||| targets:20   AGUCCCUCCAAUUUAUUCCACU   41 Target Full Sequence	2.5	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   |||||=|**||||||||||||| targets:1270   AGUCCUUACAUUUUAUUCCACU   1291 Target Full Sequence	3.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
EU956245.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   |**||||=|||||||||=|||| targets:325   AACCCCUUUAUUUUAUUUCACU   346 Target Full Sequence	2.5	Zea mays clone 1559546 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958427.1	ncRNA:22   UCAGGGAGAUAAAAUAAGGUGA   1   |**||||=|||||||||=|||| targets:351   AACCCCUUUAUUUUAUUUCACU   372 Target Full Sequence	2.5	Zea mays clone 1690251 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget