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BaseInfo

ncRNA ID novel_zma_miR10791
Species Zea mays
Class miRNA
Genome position Chr4:202220941-202221158 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 22
Mature sequence(if miRNA) 197 - ACCGGCUCACCAUCGUUUGGCC - 218
Stem-loop(if miRNA) --                         A                                    C    G   G                    G  G  G       U
  CCAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCC GGCU CAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G
  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || || |||||||
  GGUUUGCUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGG CCGA GUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A
CC                         G                                    A    A   G                    A  G  G       U
Stem-loop sequence CCAGACGAUGGUGAGCCGGUGUACUAUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGCCAGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAGAGUACACCGGCUCACCAUCGUUUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:22   CCGGUUUGCUACCACUCGGCCA   1
  *||||=||||||||||||||||
targets:3204   AGCCAGACGAUGGUGAGCCGGU   3225

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:22   CCGGUUUGCUACCACUCGGCCA   1
  *||||=||||||||||||||||
targets:3342   AGCCAGACGAUGGUGAGCCGGU   3363

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget