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BaseInfo

ncRNA ID	novel_zma_miR10788
Species	Zea mays
Class	miRNA
Genome position	Chr5:56643427-56643641 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	22
Mature sequence(if miRNA)	1 - ACAUAUGAUAUCAUGAUACGUG - 22
Stem-loop(if miRNA)	--        U                C          UU    A  A    C  -   AAA     C                         --UC     U    - U   CGUGUCAU AUAUCAUAUGUAGAGG UGUGAUAAAA  UUGA AA GUUU GA GAA   UGUGA ACACUAUGUGUAGAAACCUAAGAGA    CACAU GAAA C C   |||||||| |||||||||||||||| ||||||||||  |||| || |||| || |||   ||||| |||||||||||||||||||||||||    ||||| |||| | U   GCAUAGUA UAUAGUAUACAUCUCC ACACUAUUUU  AACU UU CAAA CU CUU   ACACU UGUGAUACACAUCUUUGGAUUCUCU    GUGUA CUUU G A GU        C                A          UU    C  A    C  A   -CA     C                         UGAU     -    A U
Stem-loop sequence	CGUGUCAUUAUAUCAUAUGUAGAGGCUGUGAUAAAAUUUUGAAAAAGUUUCGAGAAAAAUGUGACACACUAUGUGUAGAAACCUAAGAGAUCCACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCUUAGGUUUCUACACAUAGUGUCUCACAACUUCAUCCAAACAUUCUCAAUUUUUUAUCACAACCUCUACAUAUGAUAUCAUGAUACGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403222.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=|||||||||||||||| targets:13   CACGUGUCAUGAUAUCAUAUGU   34 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
HI403220.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=|||||||||||||||| targets:13   CACGUGUCAUGAUAUCAUAUGU   34 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=|||||||||||||||| targets:13   CACGUGUCAUGAUAUCAUAUGU   34 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
JB163681.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=|||||||||||||||| targets:13   CACGUGUCAUGAUAUCAUAUGU   34 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=|||||||||||||||| targets:13   CACGUGUCAUGAUAUCAUAUGU   34 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=|||||||||||||||| targets:13   CACGUGUCAUGAUAUCAUAUGU   34 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=||||||||||||||*| targets:13   CACGUGUCAUGAUAUCAUAUAU   34 Target Full Sequence	2.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=||||||||||||||*| targets:13   CACGUGUCAUGAUAUCAUAUAU   34 Target Full Sequence	2.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   |||||=||||||||||||||*| targets:13   CACGUGUCAUGAUAUCAUAUAU   34 Target Full Sequence	2.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
BT069760.2	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   *|**|||||||||||=|||||| targets:1448   AAAUUAUCAUGAUAUUAUAUGU   1469 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0229D16 mRNA, complete cds	NA	coding protein	psRNATarget
BT018432.1	ncRNA:22   GUGCAUAGUACUAUAGUAUACA   1   =|***||||||||||||||||| targets:1815   UAAAAAUCAUGAUAUCAUAUGU   1836 Target Full Sequence	2.0	Zea mays clone EL01N0368B06.d mRNA sequence	NA	coding protein	psRNATarget