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BaseInfo

ncRNA ID novel_zma_miR10782
Species Zea mays
Class miRNA
Genome position Chr4:166122387-166122498 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 92 - UCCAAUUCUAUGUCCACCAAA - 112
Stem-loop(if miRNA) --    A      A    A    -                         -A     A
  UGGU GACAUG AAUU GAGG GAUCCAUGUGGGAGUAAUCCCUUCC  AUUCA A
  |||| |||||| |||| |||| |||||||||||||||||||||||||  |||||
  ACCA CUGUAU UUAA CUCU UUAGGUACACCCUCAUUAGGGGAGG  UAAGU U
AA    C      C    C    A                         GA     U
Stem-loop sequence UGGUAGACAUGAAAUUAGAGGGAUCCAUGUGGGAGUAAUCCCUUCCAAUUCAAAUUUGAAUAGGGAGGGGAUUACUCCCACAUGGAUUAUCUCCAAUUCUAUGUCCACCAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552919.1
ncRNA:21   AAACCACCUGUAUCUUAACCU   1
  ||||||||||||=||||||||
targets:1507   UUUGGUGGACAUGGAAUUGGA   1527

1.5 PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020552918.1
ncRNA:21   AAACCACCUGUAUCUUAACCU   1
  ||||||||||||=||||||||
targets:2160   UUUGGUGGACAUGGAAUUGGA   2180

1.5 PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X2, mRNA NA coding protein psRNATarget